Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2137 ATGTCCATGCGCCCCTTCCTCCCCAAATGCCTCTTCTTCAGCTCTTCGCCAGCTCGTGCTCTTCTTCTTCCACTTCAACTCAGCCAATTCTCGTCTTCGTCGCATTCGCCTTCGTATCATCCGAGACGGTTAGAGGAGGAGTCACGCCACGTGAGGGTGTCGGTGTGGTGGGATTTCGAGAACTGCCAAGTGCCGAACACCATCAACGTCTCCAAGATCGCCACCGTCATAACGGAAGCCGTTAGAGCCAACGGTATTAAGGGGCCCGTCCATATAACGGCCTTCGGGGATGTCTTGCAGCTTTCTAGATCCAACCAGGAGGCACTTTCTTACACCGGCATTCATCTCGCCCACGTTCCCAATGGTGGAAAGAATAGTGCTGATAGATCTCTTCTTATTGATCTSATGTGTTGGGTTTCTCAAAACCCGCCACCTGCGCATCTCTTTCTGATTTCTGGGGATAAAGACTTTGCTGGCATATTGCACCGCTTAAGAATGAATAACTACAACATCCTGCTTGCAACTCCAGGATCAGCTTCTGATGTGCTATGCGCTGCAGCAACTATAATGTGGCACTGGCCATCTTTGCTTAAGGGAGAAGAACTTACTGGAAAGCATTTCAATCATCCTCCAGATGGCCCTGTTYGTTCTTGGTATGGAAATTATAAGGTGCCTCTTGAAAATCCCTTCTCAGCTAGTGAGCAGTCTGCATCTTGTCAAAAAGCAGAAAGCTGTGAATCTCCCCCAATTCCTAAGTCAGTTGCAAGGCAGGTTAGGAAAATATTAAGTTCGCATCCAAAAGGGATGTCCATTACAGATTTTCGTGCGGAGTTGGCTAAAAATAATGTGCAATTGGAGAAATCATTCTATGGACAGAAAAAGTTTTCCCGTTTTCTTCTATCAATACCACACGTACAGCTCAAGCATTTAGATGGTGTTTATTTTGTGTGTTTGGCTCCCTCAGAGTTTCCCAAACCCCTTGCAAGCAATGATGGGCCATCAAAAACACCTGCTGTTGGGAATGAAACACCTCAAAAGTTGAATGGTGAGAGTAAAAATATGCCTAGAGATGCAGATAGGACGCCTTCAATGCCCTCATTGCATGAAAGGAGTAGTGAGAAGATTGGGAATATGACTGATGCACGATTGTCTAAGGTTCAACTGCCACAAAAAGACAAGGAAGTTTCACAATTTAAGGCAGATAATGAGATTGTAACGCCTGACAAGATAGGTCTCAATAAATCTGGAAAACCTACTTCATCAGATGACCACTCTGCTCAGAACACATTGGTAGAAAACAATCTTGTTGATGATGAATCTGGAAAATATATAGCTGAGTACAAAAATGAGGGGCCAACTAGAGGGGATGCTGATGAGGTTTGTCAAAGCTCTTATTCTTTGCCAGTTGATGACTTCATGGTTGAWAAGAGGCATGGRGGGAGTGTTGAAACTCATAGCAAAAGTTCAATATTTGGTTGGATTAGAAGTTGGTTTCCATTTTGGAAAAGAAATGCTAAATCTGATGATTTAACCACTAATAAGACCAGCATGGATAGTCACTCTGAGTTTGAGGAGCCCAAGTTATCTCAACTGGACATGGCAGTAAGTCATTCGGAGGAGCCCAAGCTATGTCAACCAGACATGGCTATAAGTCATTCGGAAGAGCCCAAGCTATCTCAAGTAGACGAGACTATAAAACATTCTGAGGAGTCCAAGCTATCCGAACAGAACCAGAGTGTTATTCATGCCGAAGAGCCGAAAATATCAGATCAGGCGCCCATGTTATCTGAGCCAAACCAGATTGTTAGTCATTCTGTAGAGACCAAATTATGTGATCGGGACCAGACTGTTTCTCAGTCTGTAGAGGCCAACACATCAGAAGTGAACCAGAATGTTGGTCATTCTGACAAGCCCYAGTTATTTTTTAGAGATTCCTTTTGGAATTACATGGAATCTTTTGTTTTTACCACCCAAGGATCAGTTCTCGTCTCCCTGTCAACAAGCAGGGAGGATTTGGCACAAAAATTACAAAAGGGCGGTCCTGCGGTTCTCYAGTCTCTCACTGAAAAGGATATTCTTCAACTGATTGATTTATTAATAGCAGACAAGAAATGGTTGGAYGTAAGCYGCTCCACAAAKTATCCATTTAAGGTGACTCGACCAGTTCAGAAGAACTCATCAATGGGCCTTTCTCATGGTGCGAATGGCCTTCGYTCTCTCTTTTTAAATAGAYCATCACAGTCCAACCTGCAGAAATTACTTGAACATGATGCAGAGAAACACAATCAGAATACTCCTCATACTAGTGTTTTGAAACTTGCCACTGAAAAACTATATGCTGAGAGGTCTAGAAATGATATATTAGTAGACTGCCAAAAAGTTGTGGATGAAATATTGAGAATCCACCCAGAGGGATACAATATTGGTTGTTTCCGAAAACTATTTTATGAGATGTGTGGCTATCATATTAYTTTACAGAAGCTCGGTTATAAAAATTTGGCATCCTTATTGCAGACAATGCAGGGAGCTAAATTAGAGTCCACTAATATTTTTCCTTCTGTTCCTGCTGATGTTTGTTATTCTGACCGGGAAACTTCAATCCTCAAAACTCAAGTTACCAGGGCTAGTCATGCAGTCACCTACTCAGATAGTGAATTGTCTGGTTCAGCTCCAAAGGATGATAGCATGGACTCTCCATGGGAAGAATTAGGTCCTATTTCTGCCAAAAATTCTGACCAGAGTGATGTGGAATCAGAATTAAGTAGGAATGCCAAAGAACTGGATACCTCAAAGTATCCTGATTATGAACCTGTTGGCTTAGATTATGATCCTTCTGAATCTGAAGAAGATAGTAGCTGTTTAACTCAACCAGAAGAGCAAGGAAAGCCAAGATGTAATGAGCAAGACAGTTCTCTTCTCAAAGTTTTGGATTTCTGGCACTGTAGAAAGGAAGGAGAGAATAGTGCAAAGAATTCAGATAGTGTTGACATCTTTAATAATGATTCTCTGAAAAGGATTTTGAATCCATCGGGCYAGTCATCTCAGGGTGCCCTTTCCAAAATTCCTTCAGGGAACTATAYAGAGAAGCATAGTTCTCGAAAGAGCTATTCATTTGTAGCTGATCCACTTTTATCCCCGAAGGACAAACTGATTGATGGGATGCTTGATGGCTTCAAGAAAACAGATGAGTCTAAGATGCAAAATTGA 3207 0.4216 MSMRPFLPKCLFFSSSPARALLLPLQLSQFSSSSHSPSYHPRRLEEESRHVRVSVWWDFENCQVPNTINVSKIATVITEAVRANGIKGPVHITAFGDVLQLSRSNQEALSYTGIHLAHVPNGGKNSADRSLLIDLMCWVSQNPPPAHLFLISGDKDFAGILHRLRMNNYNILLATPGSASDVLCAAATIMWHWPSLLKGEELTGKHFNHPPDGPVXSWYGNYKVPLENPFSASEQSASCQKAESCESPPIPKSVARQVRKILSSHPKGMSITDFRAELAKNNVQLEKSFYGQKKFSRFLLSIPHVQLKHLDGVYFVCLAPSEFPKPLASNDGPSKTPAVGNETPQKLNGESKNMPRDADRTPSMPSLHERSSEKIGNMTDARLSKVQLPQKDKEVSQFKADNEIVTPDKIGLNKSGKPTSSDDHSAQNTLVENNLVDDESGKYIAEYKNEGPTRGDADEVCQSSYSLPVDDFMVXKRHGGSVETHSKSSIFGWIRSWFPFWKRNAKSDDLTTNKTSMDSHSEFEEPKLSQLDMAVSHSEEPKLCQPDMAISHSEEPKLSQVDETIKHSEESKLSEQNQSVIHAEEPKISDQAPMLSEPNQIVSHSVETKLCDRDQTVSQSVEANTSEVNQNVGHSDKPXLFFRDSFWNYMESFVFTTQGSVLVSLSTSREDLAQKLQKGGPAVLXSLTEKDILQLIDLLIADKKWLDVSXSTXYPFKVTRPVQKNSSMGLSHGANGLRSLFLNRXSQSNLQKLLEHDAEKHNQNTPHTSVLKLATEKLYAERSRNDILVDCQKVVDEILRIHPEGYNIGCFRKLFYEMCGYHIXLQKLGYKNLASLLQTMQGAKLESTNIFPSVPADVCYSDRETSILKTQVTRASHAVTYSDSELSGSAPKDDSMDSPWEELGPISAKNSDQSDVESELSRNAKELDTSKYPDYEPVGLDYDPSESEEDSSCLTQPEEQGKPRCNEQDSSLLKVLDFWHCRKEGENSAKNSDSVDIFNNDSLKRILNPSGXSSQGALSKIPSGNYXEKHSSRKSYSFVADPLLSPKDKLIDGMLDGFKKTDESKMQN* 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2137 1068 CDD LOTUS 790 840 - -
Amo03g2137 1068 MobiDBLite consensus disorder prediction 915 932 - -
Amo03g2137 1068 CDD PIN_limkain_b1_N_like 52 176 - -
Amo03g2137 1068 ProSiteProfiles OST-type HTH domain profile. 787 864 IPR025605 -
Amo03g2137 1068 Pfam OST-HTH/LOTUS domain 251 309 IPR025605 -
Amo03g2137 1068 Pfam OST-HTH/LOTUS domain 792 843 IPR025605 -
Amo03g2137 1068 MobiDBLite consensus disorder prediction 1006 1032 - -
Amo03g2137 1068 MobiDBLite consensus disorder prediction 883 968 - -
Amo03g2137 1068 MobiDBLite consensus disorder prediction 334 350 - -
Amo03g2137 1068 CDD LOTUS 251 318 - -
Amo03g2137 1068 MobiDBLite consensus disorder prediction 352 367 - -
Amo03g2137 1068 Gene3D - 251 318 IPR041966 -
Amo03g2137 1068 ProSiteProfiles OST-type HTH domain profile. 250 320 IPR025605 -
Amo03g2137 1068 PANTHER EMB|CAB71880.1 11 1003 - -
Amo03g2137 1068 Pfam NYN domain 52 187 IPR021139 GO:0004540
Amo03g2137 1068 Gene3D - 44 193 - -
Amo03g2137 1068 Gene3D - 782 848 IPR041966 -
Amo03g2137 1068 MobiDBLite consensus disorder prediction 326 373 - -
Amo03g2137 1068 PANTHER LIMKAIN B LKAP 11 1003 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2137 Amo-Chr3 80761756 80766417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2137 51 199 C2H2 Transcription Factor Family AT5G61190 45.638 6.83e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2137 - - ahf:112782923 2009.57