Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2136 ATGGATTTGGATGATTTCCGATCCATATTGGATACTGCCGGCGTTGACGTTTGGCTCTTCATCGACACCGCCATCACCGTCGCRTCCTTGGATTGCGGTGARGAGCTGAGGCGACGGAGGGATGGAATCATAGAACGAATCTTCGCTGCCACKACACCTCCTCTGCCGTGCCGGAACTGCGACGGCGATCGTAACCTGAGGTCCAATGGCRACCAAATCAAGAAACGCCTCAGCCCTAGCCCTAGCCCTCAGCGACAACACAGCCACCACCAGCAACGTCGTGGTGGCCGTGGTGCCGCCGCTGCAGTTTCTCCCTCAACGCCGCAGTCTCTCGGAGATGATGATGACAACGGCCACGCCGACGCCGACGCCGCCGAAGACGACCGTGAAGATTTGGATCCTTACGGCGGCTTGTTCGATGATGAGCAGAAGAAGATTCTAGAGATTAAAGAGCAGCTCGAAGAACCRGACCAGTCTGAAGAATCGTTGGTGGAGCTGCTGCAAAATCTCGCAGACATGGATATTACATTCCAAGCGTTAAAGGAGACTGACATTGGGAGGCACGTGAATCGGTTGCGAAAGCATTCCTCCAATGACGTTCGCAGATTGGTGAAGCTACTTGTGAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAGGTTGAATCAACCGGGTGGAACAGCTTCTCTCATGGCTGATGGGGACTCTCCACCGCTGAAAACCACCCAAAACGGGCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGAAGTTCTGGGTCTGACCGTAACACCTCAGAGGCAGAACCAAAACCAAAAGTGATTCCCCGCAAAGAAGCTCCGCCAAAACCAACGCCGCCACCTTCAGTCCCTACTCCTTCCATCGCCTTCCAAAATAGACAGAGAGAACAAAGAGATAGAGATTTTGACGCGGAGAGGCTTGCTTCGGCAAGGAAGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCGAAAAAGCAAAGAACGATTCAGGTGATGGACATCCACGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGAAAGAACAAAGGCAGTGGCGGTTCTCAGGGAAGGCACTGGTGA 1122 0.5205 MDLDDFRSILDTAGVDVWLFIDTAITVASLDCGEELRRRRDGIIERIFAATTPPLPCRNCDGDRNLRSNGXQIKKRLSPSPSPQRQHSHHQQRRGGRGAAAAVSPSTPQSLGDDDDNGHADADAAEDDREDLDPYGGLFDDEQKKILEIKEQLEEPDQSEESLVELLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKEIVDEWVRLNQPGGTASLMADGDSPPLKTTQNGHHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKVIPRKEAPPKPTPPPSVPTPSIAFQNRQREQRDRDFDAERLASARKRLQENYKEAENAKKQRTIQVMDIHELPKSKPKNAFFGKNKGSGGSQGRHW* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2136 373 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 140 225 IPR035441 -
Amo03g2136 373 MobiDBLite consensus disorder prediction 304 354 - -
Amo03g2136 373 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 373 IPR044790 -
Amo03g2136 373 MobiDBLite consensus disorder prediction 283 297 - -
Amo03g2136 373 Pfam TFIIS helical bundle-like domain 166 215 IPR017923 -
Amo03g2136 373 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 373 - -
Amo03g2136 373 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 144 224 IPR035441 -
Amo03g2136 373 Coils Coil 315 342 - -
Amo03g2136 373 MobiDBLite consensus disorder prediction 71 86 - -
Amo03g2136 373 MobiDBLite consensus disorder prediction 224 373 - -
Amo03g2136 373 SMART TFS2_5 146 217 IPR003617 GO:0005634
Amo03g2136 373 MobiDBLite consensus disorder prediction 236 269 - -
Amo03g2136 373 MobiDBLite consensus disorder prediction 59 140 - -
Amo03g2136 373 ProSiteProfiles TFIIS N-terminal domain profile. 141 218 IPR017923 -
Amo03g2136 373 CDD TFIIS_I 143 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2136 Amo-Chr3 80756322 80760239 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo03g2136 Med26 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2136 - - aip:107622503 644.81