Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2108 ATGCAGCTTGAAGGAAGCACCGAAGCAGCCATCTCTCGTCGCCGTTCCTCAACGTCCAGCCACCGCCGCTGCTACAGCTTCGGCGCAACGTCGCCCTTGTTCGCCGCCGATCCGCCTCCTTTTTGGCCAAGCTTCTGCGTTTGTTTTTTGGCCAACCCTTGTCCGAGCTGCTTAGCCCTCTGTTCAGGCCTCTACGCCGCGTGTTCGAGCCTCTGTTCCGCGGCCTTTCAGCCACCGTTTCGCCATTGTCTGCCTCCATTCAGCCATCTCCGTCGCGATTTAAAACTCCTCCATTTCCCTGTGCTGTTTGAATTTCAGAACTGCTCCATCCTAAGGTTTAAAATTTCTTTCTTGTCCTCAAGGAGAGATGCAAAACATTACATTGAATTTTGGAAGCAGATTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTGAGGGACAAACTATACAATACACGCGAACGTGCTCGCCAGTTATTAGCCAATGGAACCTCTGACATCCCTGAAGAGACAACCTTCACAAATGTTGAGCAGGGGAAGTATGTAGAATGCTTGCTTTCTGTGAGCAAGAAATTGGATGTAGAGGGTGAAGTTACTGGAGTCTTCTGCTTCTTACAGACAGCTAGCCCTGAGCTTCAACAAGCATTGCATATTCAGCGTTTATCCGAACAAACTGCCTTGAAGAGACTCAAAGCTTTAACTTATATGAAAAGGCAAATTCGGAATCCTTTGTGTGGGATTGTCATGACAAAGAGCAAGGCAATGGGTATCCATATAATCAACGAAGTCACGGAGCACATCATGACAGAAACCTTATATGGTGATAGTCTTAGGCTGCAGCAAGTCTTGGCTGACTTCTTATTGATTTGCATCAATTTTACGCCAACCGGAGGTCAAGTTGTTGTTGCAGCCTCTTTAACAAAAGATCAATTAGGCAAATCAGTTCATTTGGCTAACTTGGAGATAAGCATAACACATGATGGTGTTGGTGTTCCGAAAATATTGCTGAACCAAATGTTTGGACAAGACGGACAAGAATCCGAGGAGGGTATTAGTCTGCTCATCAGTAGAAAGTTGCTGAAGCTAATGAATGGAGACGTGCGGTATCTGAGGGAAGCTGGCAAATCATCTTTCATCTTAACAGTTGAACTGGCTGCTTCCCAGAAATTGATTGCTTAA 1185 0.4591 MQLEGSTEAAISRRRSSTSSHRRCYSFGATSPLFAADPPPFWPSFCVCFLANPCPSCLALCSGLYAACSSLCSAAFQPPFRHCLPPFSHLRRDLKLLHFPVLFEFQNCSILRFKISFLSSRRDAKHYIEFWKQIPPNEPYRVILGDVRDKLYNTRERARQLLANGTSDIPEETTFTNVEQGKYVECLLSVSKKLDVEGEVTGVFCFLQTASPELQQALHIQRLSEQTALKRLKALTYMKRQIRNPLCGIVMTKSKAMGIHIINEVTEHIMTETLYGDSLRLQQVLADFLLICINFTPTGGQVVVAASLTKDQLGKSVHLANLEISITHDGVGVPKILLNQMFGQDGQESEEGISLLISRKLLKLMNGDVRYLREAGKSSFILTVELAASQKLIA* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2108 394 Pfam PAS fold 153 208 IPR013767 GO:0006355
Amo03g2108 394 Gene3D - 245 386 IPR036890 -
Amo03g2108 394 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 246 381 IPR036890 -
Amo03g2108 394 ProSiteProfiles Histidine kinase domain profile. 250 390 IPR005467 -
Amo03g2108 394 PANTHER TWO-COMPONENT HISTIDINE KINASE 250 389 - -
Amo03g2108 394 PANTHER TWO-COMPONENT HISTIDINE KINASE 179 252 - -
Amo03g2108 394 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 276 386 IPR003594 -
Amo03g2108 394 Gene3D Phosphoenolpyruvate/pyruvate domain 100 244 - -
Amo03g2108 394 PANTHER PHYTOCHROME A 250 389 - -
Amo03g2108 394 PANTHER PHYTOCHROME A 179 252 - -
Amo03g2108 394 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 122 251 IPR015813 GO:0003824
Amo03g2108 394 SMART HKATPase_4 276 388 IPR003594 -
Amo03g2108 394 Pfam Phosphoenolpyruvate carboxylase 120 180 IPR021135 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2108 Amo-Chr3 78659331 78663122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2108 166 391 Histidine Kinase Gene Family AT1G09570 51.877 1.44e-81 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2108 K12120 - adu:107479533 263.462