Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2100 ATGGCTGGAATACTTCCCGGAGTTGAATGTGCTAGAAGGAGAAGACTCCATCAAAGTAAAGGATTCTTGGATTTACCATCTTCCACGGCTTCTTCACATAACTCTACAAGGCGCACTTCTTTTGGTTTGTATGCAGCAAACCATGAGCCCCTTCATTCCTCTTCATCTCCTTCTTTGCTGAAGCGTGATCTACCAGGCGCAACCAGATTTGACATAAAATGTTCGGAAAATAGACAAGCAAGCATAGCAGAGTTGCACACAGAGGTATATGGTTCAAAGAAAAGTGGTTCTAGAAGGTTCAATTGGTCCAAATTGAGGTGGAAAGCCTCAGAACAAGAGGATTGTGCTGTGTGCTTGGAGTTATTCAAGGTTGGAGAGACTCTGATGCATCTCCCTTGTGCCCATAAGTTCCATTCCAAATGCTTGAACCCATGGTTTGAAAATAATTCACATTGTCCATATTACTTTGTTAATAGAAACAATTATTCAATATTGGAAAGGGTTACTAGTCAGTCCGGAACTGTGAGGCCAAGAAACTGGGAAGTGAGGGTGGATGCTCTTTCATTCCTTGGTGATATTCCTATCCACCATGAGGATAATGATATGAATCATTTTGTGGTGGTGAGAAATATCCCATATGATTATCTTGTTCATCTTGTGGCTTTGAAGTGCATCTCCATGGATTGGAGTGCTTAG 696 0.4167 MAGILPGVECARRRRLHQSKGFLDLPSSTASSHNSTRRTSFGLYAANHEPLHSSSSPSLLKRDLPGATRFDIKCSENRQASIAELHTEVYGSKKSGSRRFNWSKLRWKASEQEDCAVCLELFKVGETLMHLPCAHKFHSKCLNPWFENNSHCPYYFVNRNNYSILERVTSQSGTVRPRNWEVRVDALSFLGDIPIHHEDNDMNHFVVVRNIPYDYLVHLVALKCISMDWSA* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2100 231 ProSiteProfiles Zinc finger RING-type profile. 115 153 IPR001841 -
Amo03g2100 231 SUPERFAMILY RING/U-box 103 154 - -
Amo03g2100 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 85 154 - -
Amo03g2100 231 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 85 154 - -
Amo03g2100 231 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 63 - -
Amo03g2100 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 63 - -
Amo03g2100 231 SMART ring_2 115 155 IPR001841 -
Amo03g2100 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 158 IPR013083 -
Amo03g2100 231 CDD RING-H2_PA-TM-RING 114 154 - -
Amo03g2100 231 Pfam Ring finger domain 114 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2100 Amo-Chr3 78201356 78222057 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2100 112 153 C3H Transcription Factor Family AT1G04790 52.381 1.76e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2100 - - gmx:100527583 190.66