Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo03g2100 | ATGGCTGGAATACTTCCCGGAGTTGAATGTGCTAGAAGGAGAAGACTCCATCAAAGTAAAGGATTCTTGGATTTACCATCTTCCACGGCTTCTTCACATAACTCTACAAGGCGCACTTCTTTTGGTTTGTATGCAGCAAACCATGAGCCCCTTCATTCCTCTTCATCTCCTTCTTTGCTGAAGCGTGATCTACCAGGCGCAACCAGATTTGACATAAAATGTTCGGAAAATAGACAAGCAAGCATAGCAGAGTTGCACACAGAGGTATATGGTTCAAAGAAAAGTGGTTCTAGAAGGTTCAATTGGTCCAAATTGAGGTGGAAAGCCTCAGAACAAGAGGATTGTGCTGTGTGCTTGGAGTTATTCAAGGTTGGAGAGACTCTGATGCATCTCCCTTGTGCCCATAAGTTCCATTCCAAATGCTTGAACCCATGGTTTGAAAATAATTCACATTGTCCATATTACTTTGTTAATAGAAACAATTATTCAATATTGGAAAGGGTTACTAGTCAGTCCGGAACTGTGAGGCCAAGAAACTGGGAAGTGAGGGTGGATGCTCTTTCATTCCTTGGTGATATTCCTATCCACCATGAGGATAATGATATGAATCATTTTGTGGTGGTGAGAAATATCCCATATGATTATCTTGTTCATCTTGTGGCTTTGAAGTGCATCTCCATGGATTGGAGTGCTTAG | 696 | 0.4167 | MAGILPGVECARRRRLHQSKGFLDLPSSTASSHNSTRRTSFGLYAANHEPLHSSSSPSLLKRDLPGATRFDIKCSENRQASIAELHTEVYGSKKSGSRRFNWSKLRWKASEQEDCAVCLELFKVGETLMHLPCAHKFHSKCLNPWFENNSHCPYYFVNRNNYSILERVTSQSGTVRPRNWEVRVDALSFLGDIPIHHEDNDMNHFVVVRNIPYDYLVHLVALKCISMDWSA* | 232 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo03g2100 | 231 | ProSiteProfiles | Zinc finger RING-type profile. | 115 | 153 | IPR001841 | - | |
Amo03g2100 | 231 | SUPERFAMILY | RING/U-box | 103 | 154 | - | - | |
Amo03g2100 | 231 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 85 | 154 | - | - | |
Amo03g2100 | 231 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 85 | 154 | - | - | |
Amo03g2100 | 231 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 1 | 63 | - | - | |
Amo03g2100 | 231 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 63 | - | - | |
Amo03g2100 | 231 | SMART | ring_2 | 115 | 155 | IPR001841 | - | |
Amo03g2100 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 158 | IPR013083 | - | |
Amo03g2100 | 231 | CDD | RING-H2_PA-TM-RING | 114 | 154 | - | - | |
Amo03g2100 | 231 | Pfam | Ring finger domain | 114 | 154 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo03g2100 | Amo-Chr3 | 78201356 | 78222057 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo03g2100 | 112 | 153 | C3H Transcription Factor Family | AT1G04790 | 52.381 | 1.76e-12 | 64.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo03g2100 | - | - | gmx:100527583 | 190.66 |