Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2083 ATGGGGCACCGTTGCTGCACCAAACAGAAGATCAAAAGAGGGTTGTGGTCTCCTGAAGAAGATGAGAAGCTTCTCAGATATATCACAACTCATGGCCACAAAAGTTGGAGTTCTGTCCCTAAATTTGCAGGATTGCAAAGATGCGGAAAGAGTTGCAGATTGAGATGGATAAATTACCTGAGGCCAGATCTGAAGAGGGGTTCCTTCACTTTAGAGGAAGAGCAGATCATAATTGACATTCATAGAATTCTCGGAAACAGATGGGCTCAAATAGCGAAGCACCTACCTGGTAGAACAGACAATGAGGTCAAGAATTTCTGGAACTCTTGCATTAAAAAGAAGCTCATATCTCAAGGCCTAGATCCACAAACACACACTCTTCTCTCTTCTCACAGGAGAATTACAACCTCATCATCATCAAACTTCTCTAACAATAATAATGATTCCTTTCTCATTATTACTTCAAATATGCCAAACAGTGCTAATAATAATGCTCCCATTATTGAAACTAGCCAAGGCCTTTCTTCTTCTTCTTCACTACCTACCAATAATCAGGCTCAACCAAGTGTTGTTCAAGCACCGTCTAGCATTGTTACCTCATCGGATTTTTGTTATGAACCATCAAGAATAATAGAGAATAATAATAGTAATAATAGTAATGTCTCCAATATTATTTGTTCTCATAATTATTCACGCATGAATAATAGTATCCCATCTAAGAATAGCTTATTATGGAATTCAAGGACTGATCATGATGCTGAAGATTTCAGAGTTCAGACATTGGAAGAAGGGCAAGGAATGCAACATTCACTACATGCTGCTGATGATGATGATGATGACGAGATCAGAGAAGCTAATAATATCATTGAGATGAATACTAATGCTTCTTTGGAGGGCTCCAATAATGATAATAACAATAATAATAATTTTGACTTTGGGTTGCTGGAAAGTGTACTTAACTCTGAATTCATGTCTCATGATATCAACTATATGGATGAACTTGCATGGAACTTTTAG 1017 0.3736 MGHRCCTKQKIKRGLWSPEEDEKLLRYITTHGHKSWSSVPKFAGLQRCGKSCRLRWINYLRPDLKRGSFTLEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHTLLSSHRRITTSSSSNFSNNNNDSFLIITSNMPNSANNNAPIIETSQGLSSSSSLPTNNQAQPSVVQAPSSIVTSSDFCYEPSRIIENNNSNNSNVSNIICSHNYSRMNNSIPSKNSLLWNSRTDHDAEDFRVQTLEEGQGMQHSLHAADDDDDDEIREANNIIEMNTNASLEGSNNDNNNNNNFDFGLLESVLNSEFMSHDINYMDELAWNF* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2083 338 PANTHER BNAC05G40480D PROTEIN 1 325 - -
Amo03g2083 338 MobiDBLite consensus disorder prediction 163 193 - -
Amo03g2083 338 CDD SANT 68 108 IPR001005 -
Amo03g2083 338 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Amo03g2083 338 PANTHER MYB DOMAIN PROTEIN 55 1 325 - -
Amo03g2083 338 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Amo03g2083 338 Gene3D - 68 115 - -
Amo03g2083 338 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Amo03g2083 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Amo03g2083 338 CDD SANT 16 60 IPR001005 -
Amo03g2083 338 Gene3D - 13 65 - -
Amo03g2083 338 SMART sant 12 62 IPR001005 -
Amo03g2083 338 SMART sant 65 113 IPR001005 -
Amo03g2083 338 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Amo03g2083 338 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Amo03g2083 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2083 Amo-Chr3 76993650 76996066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2083 1 133 MYB Transcription Factor Family AT3G12720 87.970 3.11e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo03g2083 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2083 K09422 - gmx:100811532 352.829