Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2066 ATGGCTGCTCTAACGCAAAATCCTCTTTTATGCAAGCTTTCAACTAGCTATGATATGTACATTCGTGTTAAACGTAGTAAGACAACATATTTCATCAGGTGCAAGCCAACTGATAAAATTCTGGAGATAAAGCTTAAGTTGCAGGAACTTGTTGATCAGCCTGCTAATAACCAAAGGTTAATCATACCTGCTACAGGGGAAGTATTAGAGGACTCGAGGACTCTGGCGGATCAAAAGGTTGAAAATGATGCAGTTGTTGCACTGACCTTGAGAAAAGGTAAAGTAATATGGACATATTATCCTTTTCCTTAA 312 0.3846 MAALTQNPLLCKLSTSYDMYIRVKRSKTTYFIRCKPTDKILEIKLKLQELVDQPANNQRLIIPATGEVLEDSRTLADQKVENDAVVALTLRKGKVIWTYYPFP* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2066 103 SMART ubq_7 19 91 IPR000626 GO:0005515
Amo03g2066 103 CDD Ubl_ubiquitin_like 21 88 - -
Amo03g2066 103 SUPERFAMILY Ubiquitin-like 19 95 IPR029071 -
Amo03g2066 103 Gene3D - 17 100 - -
Amo03g2066 103 ProSiteProfiles Ubiquitin domain profile. 17 92 IPR000626 GO:0005515
Amo03g2066 103 PANTHER OS03G0364000 PROTEIN 18 94 - -
Amo03g2066 103 Pfam Ubiquitin family 21 92 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2066 Amo-Chr3 75728967 75730247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2066 29 96 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.232 2.46e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2066 K03873 - gmx:100499885 132.494