Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2065 ATGGATATGTACATTCGTGTTAAACGTAGTAAGACAACATATTTCATCAGGTGCAAGCCAACTGATAAAATTCTGGAGATAAAGCTTAAGTTGCAGGAACTTGTTGATCAGCCTGCTAATAACCAAAGGTTAATCATACCTGCTACAGGGGAAGTATTAGAGGACTCGAGGACTCTGGCGGATCAAAAGGTTGAAAATGATGCAGTTGTTGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTTCGGCCAAATGATTTCTACCAAGCGCGTGATGCAGATGGTGCTAATTGGTAA 312 0.4071 MDMYIRVKRSKTTYFIRCKPTDKILEIKLKLQELVDQPANNQRLIIPATGEVLEDSRTLADQKVENDAVVALTLRKDDNEFEEVNIVRPNDFYQARDADGANW* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2065 103 Pfam Ubiquitin family 5 76 IPR000626 GO:0005515
Amo03g2065 103 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Amo03g2065 103 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Amo03g2065 103 PANTHER OS03G0364000 PROTEIN 1 100 - -
Amo03g2065 103 SMART ubq_7 3 75 IPR000626 GO:0005515
Amo03g2065 103 Gene3D - 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2065 Amo-Chr3 75624448 75634398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2065 1 75 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 33.333 2.94e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2065 K03873 - gmx:100499885 192.586