Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2012 ATGGGAAGAAGTCCATGCTGTGACAAAGCTAACGTGAAAAGAGGGCCATGGTCTCATGAAGAAGATGAAATACTCAAAAGCTACCTCAACAAACATGGCTCTGCTGGTAACTGGATAGCCCTTCCTCTCAAAGCAGGCCTTAAACGCTGCGGGAAAAGCTGTCGTCTGAGATGGCTCAACTATCTCAGGCCTCACATCAAGCATGGAGCTTTCACTGACGATGAAGACAAACTTATCTCCACCCTTTATGCTACCATTGGAAGCAGGTGGTCCCTTATAGCAGCTCAGCTACCTGGAAGAACTGATAATGATGTCAAAAATCACTGGAACACTAAGCTTAAGAAGAAGTTCTTCGCAGGAGGAATAAACACTGCCAATGCCACTACTTCTGCTGTTTTGGATTTGTACCAAACACCATTCCCAGTTCCATCAAAAATGCTGCCTTTGGAATCAGACATTTCAGCTACTAATCCCTTGGTAATGAAAGAGAAAGATCATGTTGGTCATCAGTGGCTTGGTTATTATGCTGAAGAAGATGATTCCTTCTTGCTTGATATTGTGCAAAATGGATTTGCTTATTCTCAAGATAAAAACACCCAACTAGACCCATCATCGTCGTCGTCGTCGTCATATATCTAA 639 0.4304 MGRSPCCDKANVKRGPWSHEEDEILKSYLNKHGSAGNWIALPLKAGLKRCGKSCRLRWLNYLRPHIKHGAFTDDEDKLISTLYATIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFFAGGINTANATTSAVLDLYQTPFPVPSKMLPLESDISATNPLVMKEKDHVGHQWLGYYAEEDDSFLLDIVQNGFAYSQDKNTQLDPSSSSSSSYI* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2012 212 Gene3D - 7 68 - -
Amo03g2012 212 CDD SANT 16 62 IPR001005 -
Amo03g2012 212 PANTHER OS09G0431300 PROTEIN 1 126 - -
Amo03g2012 212 Gene3D - 69 131 - -
Amo03g2012 212 PANTHER OS09G0431300 PROTEIN 1 126 - -
Amo03g2012 212 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Amo03g2012 212 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Amo03g2012 212 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Amo03g2012 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Amo03g2012 212 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Amo03g2012 212 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Amo03g2012 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Amo03g2012 212 SMART sant 13 64 IPR001005 -
Amo03g2012 212 SMART sant 67 115 IPR001005 -
Amo03g2012 212 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2012 Amo-Chr3 72429610 72430511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2012 1 119 MYB Transcription Factor Family AT5G57620 74.790 6.17e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo03g2012 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2012 K09422 - gmx:778160 241.891