Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2011 ATGGACGGTGATGCTGGTGTTTCTTTGTTTTGCCTAACTCGCAGGGTACTGGACGTAGGCAGCGGCCATGCAGACATCGTTGGTCCATACGATGAGTGGTGGAGTAAGTACGAAGCAATTAAAGCAGAGCAAGTGCTTCGGATGGAGTTTAGTAGTTCGGAAGAAGCACGAAAGTTCTACAACGATTATAGTCGAGTAAAGGGTTTTGTGACGAGGCAGTGGAAGAAGATTAAGAATATTTATGGGAAAATTGTTTGGTACACAATTGTTTGCAACAGAGAAGGATTTAGACATAAGAAGTGGTTGGAAAAGAGCGATCGTAAGCGATAG 330 0.4364 MDGDAGVSLFCLTRRVLDVGSGHADIVGPYDEWWSKYEAIKAEQVLRMEFSSSEEARKFYNDYSRVKGFVTRQWKKIKNIYGKIVWYTIVCNREGFRHKKWLEKSDRKR* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2011 109 Pfam FAR1 DNA-binding domain 58 104 IPR004330 -
Amo03g2011 109 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 38 105 - -
Amo03g2011 109 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 38 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2011 Amo-Chr3 72314444 72314982 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo03g2011 FAR1 1.6e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2011 - - aip:107647165 177.563