Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1979 ATGCTTAATCTATTGGCAGTGTTACAGAAAGATAAGTTCAATCCCAGATTCTATGTTGCTACTGCTACTGATAATATAAGTCTTCAAAAGGCTCAGTTGTTGGAGAACTCCTTGGTGGATCAGTTATCCATTAAAGCGGGAGTAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAGCAATCCTGGACTCCAGGTGACCTAATTCAGGCCAAAGATCGTGCTCATAGAATTGGCCAGATACTTTGCAATGGGCATGGAACTTGTATTCCCATATGTGCAATTGCTTTCTTATTTAAGTGGCCAAAGCTGCAACAACAATATCCTCGAGCTATCTATGTTGGCTGTCTCATGGTTCAGCCCTATATACCATGGCTTTACTCTTCCATATTTGAAGGGATATTTTATCCCAATATTCTTTCTTTGGAGGCAATATTGGAAGAGATGGCTCGTGCTACTCGACTGTTAGGGGTTGAGCTATCAATAGTGCAAGCAAATATTCTCAGTCTCAGTGCTGCCCGACTGTTAGGGGATAGATTACTTCATTGA 558 0.4104 MLNLLAVLQKDKFNPRFYVATATDNISLQKAQLLENSLVDQLSIKAGVVGLTLTAASTVIFTEQSWTPGDLIQAKDRAHRIGQILCNGHGTCIPICAIAFLFKWPKLQQQYPRAIYVGCLMVQPYIPWLYSSIFEGIFYPNILSLEAILEEMARATRLLGVELSIVQANILSLSAARLLGDRLLH* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1979 185 SMART helicmild6 2 82 IPR001650 -
Amo03g1979 185 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 39 83 IPR030101 GO:0006281|GO:0031297|GO:0036310
Amo03g1979 185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 83 IPR027417 -
Amo03g1979 185 CDD SF2_C_SNF 42 83 - -
Amo03g1979 185 Gene3D - 32 84 IPR027417 -
Amo03g1979 185 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 39 83 - -
Amo03g1979 185 Pfam Oligosaccharide biosynthesis protein Alg14 like 1 117 IPR013969 GO:0006488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1979 Amo-Chr3 70439544 70442119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1979 42 103 RAD5 or RAD16-like Gene Family AT1G02670 40.323 2.71e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1979 K07441 - egr:104444823 105.916