Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1969 ATGGGAAGGAAGTGCTCACATTGTGGGAACGTAGGGCACAATTCAAGAACATGCACTTCTTCTTCGTTTCTTGGAATCCGTCTATTTGGAACCCACCTTCTAGCAGATCCCTCCTCCTCCTCCTCCTCCTCCTCCGCGACGATGATGACGATGAACAACAAGTACTTTAGCATGGACTCGTTAACATTATTCCCCACTACTACTACTACTACTACTACTGCTGCTGCTATTGGTTATCTATCAGATGGAGCTCCACCTCAAGACAAGAAGAAAGGGGTAGCATGGACGGAAGAGGAGCACAGAAGATTCCTGGTTGGGCTTGAGAAGCTGGGGAAGGGAGACTGGAGGGGCATTTCTAGAAACTTCGTAACCACCAGAACACCGACTCAAGTTGCCAGCCATGCTCAGAAGTATTTCCTCCGTCTTGCTAATACCGTAAACCACAACAAACGCCGTTCAAGTCTCTTTGACACAAACAATACTCCTCCTACTACTGCTGCTGCTGCTGCTACATTGTCATTTCACTTTCTTGAACAACAACAAACCATCAACAACAGCAATAAGCCGTTGTTATCAACAGAAACTACTTCTGAATCCTCCTCCTCCTCTTCCTCCTCCTCCTCTATGTATAATAATAGTGTGCCACCACCGGATCTGGACCTCACTCTTGCACCGCCGCCACCACCTAATTCCTCCTCATGCTTCCCCCAATTATAA 717 0.4728 MGRKCSHCGNVGHNSRTCTSSSFLGIRLFGTHLLADPSSSSSSSSATMMTMNNKYFSMDSLTLFPTTTTTTTTAAAIGYLSDGAPPQDKKKGVAWTEEEHRRFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLANTVNHNKRRSSLFDTNNTPPTTAAAAATLSFHFLEQQQTINNSNKPLLSTETTSESSSSSSSSSSMYNNSVPPPDLDLTLAPPPPPNSSSCFPQL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1969 238 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Amo03g1969 238 SUPERFAMILY Homeodomain-like 89 144 IPR009057 -
Amo03g1969 238 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Amo03g1969 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Amo03g1969 238 MobiDBLite consensus disorder prediction 219 238 - -
Amo03g1969 238 MobiDBLite consensus disorder prediction 184 238 - -
Amo03g1969 238 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Amo03g1969 238 ProSiteProfiles Zinc finger CCHC-type profile. 3 20 IPR001878 GO:0003676|GO:0008270
Amo03g1969 238 Gene3D - 93 144 - -
Amo03g1969 238 SMART sant 91 141 IPR001005 -
Amo03g1969 238 CDD SANT 94 139 IPR001005 -
Amo03g1969 238 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 169 - -
Amo03g1969 238 ProSiteProfiles SANT domain profile. 95 143 IPR017884 -
Amo03g1969 238 MobiDBLite consensus disorder prediction 184 215 - -
Amo03g1969 238 PANTHER TRANSCRIPTION FACTOR KUA1 1 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1969 Amo-Chr3 68940936 68941918 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo03g1969 Myb_DNA-binding 7.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1969 - - adu:107479628 376.326