Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1927 ATGTCTGGTTCTTGTTGCAGGAAGGGGGAGAATGAACATGATGGTCATTCAGCCTATGGAAGTAGAACTGTTAGGGAACCTAGAGTTGTAGTTCAAACTACAAGAAATATGGGACAGAAAGTAGTTAAAGGAAATCCAAATGCAAGGAGTTATTACAAATGCACAGCCCCTGGTTGTTCAGTGAGAAACATCAGTGCACCGGCGGCACCAATAAGGCCTGCGGCCGTGAATGGTTATTCTAGCGCGCCGAATTTCACGAATTCACTTTACAATCCTAGGCTTCCGGCCACCGGAACTCAAGAATCATCTTCCCTAGACATGCTGCAAGGCTCTGGACTCTTCGGCTACACGTCTCTTGGAAGATCAATGGGTTCATATGGAAACAATTCGCAACGTTCGGATGGTGTATACATCAAGGCCAAGGATGAAAGGAAGGATGACTCATTCCTTGAAAAAGAAAGCAAAAAAGTTTCATTTATAAGATTCTAA 489 0.4397 MSGSCCRKGENEHDGHSAYGSRTVREPRVVVQTTRNMGQKVVKGNPNARSYYKCTAPGCSVRNISAPAAPIRPAAVNGYSSAPNFTNSLYNPRLPATGTQESSSLDMLQGSGLFGYTSLGRSMGSYGNNSQRSDGVYIKAKDERKDDSFLEKESKKVSFIRF* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1927 162 Gene3D WRKY domain 28 69 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo03g1927 162 MobiDBLite consensus disorder prediction 7 21 - -
Amo03g1927 162 Pfam WRKY DNA -binding domain 35 62 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g1927 162 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 63 118 - -
Amo03g1927 162 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 8 63 - -
Amo03g1927 162 SMART WRKY_cls 38 73 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g1927 162 MobiDBLite consensus disorder prediction 1 27 - -
Amo03g1927 162 ProSiteProfiles WRKY domain profile. 35 62 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo03g1927 162 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 63 118 IPR044810 GO:0003700
Amo03g1927 162 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 8 63 IPR044810 GO:0003700
Amo03g1927 162 SUPERFAMILY WRKY DNA-binding domain 35 63 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1927 Amo-Chr3 65829464 65830488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1927 8 116 WRKY Transcription Factor Family AT2G38470 38.650 7.66e-18 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo03g1927 WRKY 7.4e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1927 K13424 - adu:107472292 245.358