Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1924 ATGGAGACGGAGGAGGGAGAAAATGGAGTGATCGTGCCCCCTCGTTCCGGTGCTGGTAAAAGCCTGTTCGGAATCGCCGCCGCAGCTTCTAGAAGGATGCAACAACAGCAACGGCATAGAGAGAAGGAGAACTCTAACGCTCCTTCGCCTTCAACTTACGATATGGCTGTAACAGGGAGAGTTAGTAGAAAGAAGAAGCATAAGCGTCTTCAGGAATTTTTTACAACGGACTATGATAATTTGAGGAGCGATGGTCCTCCTATTGGTCTCGAATTTGATTATCTTCCTTCTCGGTCAGAGAGTTACACTCCTTCATATGTAGAGGACTACGGGCCCGCCAAAATGAGAAAGGTTTCCAAGAGTGCATGTGGAAGTCACCCAAGCTTTAATAAGAAAACATCAGTGAAGAAACATGGTATGGGCAAAGGTTTGATGACAGTCTGGAGGGCAACCAATCCTTATGCTGAAGACCTTCCAAATGACTTTGATTTTGATAGCCGAGAGCAAGGCACTCATCTAGTCTCAAAGTCTATGGTACAGAAACCAGTTCGTGAGAACAGAAGAAATAAAACACAGCACAGGATAAATAAGTCTCAGGACAAGAGGAAACTTTCCATACAAAGACAAATGGGGAAATCTAATCTATATGTAACTCAGAACCAGTCATCGGAGGAAAAATGTGAACTTGCAGTGGATAGCGCAATATTTGAGGAGGGATTTGATCAAATTTCAATGTTAGTCGATGATGAGGAGCTTGAGATGAGAGAGTTCCGAGCAGGAACCAATATGCTGTTGTGTTCTGATCATCTTGCTGCAAGTGGAATGTTTGGTTGCGCACTCTGCAAAGATGTGCTAGTTAAGTTCCCCCCAGATACTGTCAAAATGAAGAAACCTATCTGTTTGCAACCTTGGGATTCCTCTCCAGAAATTGTGAAGAAATTATTTAAGGTTTTTCATTTCCTTTATACATATGCTACAGTAGTCAATATATGCCCATTCACTCTGGATGAGTTTGTTCAAGCATTTCATGATAAGGACTCAGTTTTAATTGGAAAGACTCACATAGCCCTTCTCTCACTTCTTCTATCTGACATTGAAGTGGAGCTTACCAATGGTTTTTCACCTCATTTAAATAAGTCCTGCAATTTTCTTGCATTGCTTCATTCAGTTGAAAGTCAAGAATATTCTGTAGACTGCTGGAGAAGTTCTCTGAATGCTCTTACTTGGGTTGAAATACTTCGTCAAGTGCTTGTTGCTTCTGGATTTGGTTCAAAGCAAGGGGCCTTACGAAGAGAGGCACTTAGCAAGGAGTTGAATCTTTTTGTAAACTATGGCCTACACCCTGGCACCTTGAAGGGAGAGTTGTTTAAAATCTTGTCAGAGCGAGGAAACAATGGATGCAAGGTATCTGAGCTAGCAAACTTAAAACAGATTGTAGAATTAAACCTTGATGGCACAACTGGGGACCTGGAATCTTTAATATGTTCCACACTTTCAAGTGATATTACTTTATTTGAAAAGATTTCACCATCTGCATATCGTGTGCGTATGAGCACTGTTACGAAGGACATAGATGATTCTAAATCAGATATGGAGGATGCTGGGAGTGTTGATGATGAAATCAATTACAATGATACGTTTAGCAGTGATGATGATTTTGAAAATGATTCAAGAGGCGGCAACATGAGAAAACTGAAGTGTGTTAACGGTCATAAAACCAAGAATAATATGCTGAAAGTATATACTGAAATTGATGAGAGCCATCCAGGAGAAATATGGTTGTTAGGACTGATGGAGAGTGAATATTCAGATTTGAAAATTGAAGAAAAATTGAATGCTTTGGCTGCTCTAACTGATCTTCTTTCCTCTGGTTCCAGCATCAGGATGAAGGACCCAACAAAAATCACAGTTGACTGCCATTCGAGCATCCAACATGGTTCTGGAGCGAAAATAAAAAGAGCATCGTCAATAAAGAAGCCGGGACCATTTTGGTACCAGATTGGACAAATGCAACATGCAAAAGAATTGAACTCATCTTTTCTACCATGTCCAGTAGATTCCACATCCTTAATCTCAAATTCCAGTAACCAGGGAGAGAAGGAAAAAGGGTCAATTGATTCACATCCCATTCAATCAGTATTTTTGGGATCTGATCGTCGCTACAATAGATACTGGCTTTTCCTCGGCCCTTGTAATGCTGATGATCCTGGCCACAGGAGGGTTTACTTTGAATCTTCTGAAGATGGTCACTGGGAAGTGATTGATACTGAAGAGGCCTTATGTGCCTTGCTATCAGTGTTAGATGATAGAGGGAAACGGGAGGCTCATCTCATTGAATCTCTGGAAAAGCGGCAAGCATCTCTATGCAGATTTATGTCTAGTATTAAGGTTAACAGTACTGGAATGGGTTCTATGTTGCATTCTGATCAATCTGAGCTGGATATGGTTTCAGAAGACAGTTATTCCCCGGTATCTGATGTAGACAATCTGAATCTGATTGAGACTGCAAAAGACACAATACCTTCAGCAGGGGCTGTGATTATTGAAGCTGGAAAGAAGGGTGAGGAACAAGTGCAAAAGTGGCTCCGTGCTCAAGGATATGATTCTTGGATTTGGGGATCCTTTTATTTAGATCTTAACGTTGTAAAATATGGTAGAAGGTCTTATCTTGATTCTCTAGCGAAATGTCTGACTTGTCATGATCTTTATTGGAGAGACGAGAGACACTGCAGGATTTGCCATACCACATTTGAGCTTGATTTTGATCTAGAAGAGAGATACGCCATTCACAGAGCTACATGCTGTCAGAAAGAGGATGTTAATACATTTCCAAATCATAAAGTTCTATCATCACAGATTCAATCACTGAAAGCTGCAATTTATGCTATTGAGTCTGTTATGCCTGAAGATGCCTTAGTAGGTGCTTGGAGGAAATCTGCTCATAAGCTATGGGTTAAACGACTCAGGCGCACTTCATCTTTAGTTGAGCTTTTGCAGGTTCTCTCTGATTTCGTTGGTGCAATAAACAAGCACTGGCTGTTTGAGTGCAACTTACCAGATAAAGTTGTTCAAGAAATCATTGCATATTTTGCATTAATGCCCCATACATCATCAGCCCTTGCTCTCTGGTTGGTGAAGTTAGATGCCATAATTGCTCCCTACCTTGACAGAGGTCGTCCTCAGAAGAAGCAGGGAATCGGCAATCATGGTCATTGCTGA 3219 0.4113 METEEGENGVIVPPRSGAGKSLFGIAAAASRRMQQQQRHREKENSNAPSPSTYDMAVTGRVSRKKKHKRLQEFFTTDYDNLRSDGPPIGLEFDYLPSRSESYTPSYVEDYGPAKMRKVSKSACGSHPSFNKKTSVKKHGMGKGLMTVWRATNPYAEDLPNDFDFDSREQGTHLVSKSMVQKPVRENRRNKTQHRINKSQDKRKLSIQRQMGKSNLYVTQNQSSEEKCELAVDSAIFEEGFDQISMLVDDEELEMREFRAGTNMLLCSDHLAASGMFGCALCKDVLVKFPPDTVKMKKPICLQPWDSSPEIVKKLFKVFHFLYTYATVVNICPFTLDEFVQAFHDKDSVLIGKTHIALLSLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESQEYSVDCWRSSLNALTWVEILRQVLVASGFGSKQGALRREALSKELNLFVNYGLHPGTLKGELFKILSERGNNGCKVSELANLKQIVELNLDGTTGDLESLICSTLSSDITLFEKISPSAYRVRMSTVTKDIDDSKSDMEDAGSVDDEINYNDTFSSDDDFENDSRGGNMRKLKCVNGHKTKNNMLKVYTEIDESHPGEIWLLGLMESEYSDLKIEEKLNALAALTDLLSSGSSIRMKDPTKITVDCHSSIQHGSGAKIKRASSIKKPGPFWYQIGQMQHAKELNSSFLPCPVDSTSLISNSSNQGEKEKGSIDSHPIQSVFLGSDRRYNRYWLFLGPCNADDPGHRRVYFESSEDGHWEVIDTEEALCALLSVLDDRGKREAHLIESLEKRQASLCRFMSSIKVNSTGMGSMLHSDQSELDMVSEDSYSPVSDVDNLNLIETAKDTIPSAGAVIIEAGKKGEEQVQKWLRAQGYDSWIWGSFYLDLNVVKYGRRSYLDSLAKCLTCHDLYWRDERHCRICHTTFELDFDLEERYAIHRATCCQKEDVNTFPNHKVLSSQIQSLKAAIYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSSLVELLQVLSDFVGAINKHWLFECNLPDKVVQEIIAYFALMPHTSSALALWLVKLDAIIAPYLDRGRPQKKQGIGNHGHC* 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1924 1072 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 711 784 IPR028941 -
Amo03g1924 1072 MobiDBLite consensus disorder prediction 175 204 - -
Amo03g1924 1072 PANTHER OS07G0619600 PROTEIN 38 1063 - -
Amo03g1924 1072 MobiDBLite consensus disorder prediction 1 64 - -
Amo03g1924 1072 Coils Coil 26 46 - -
Amo03g1924 1072 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 590 628 IPR028942 -
Amo03g1924 1072 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 38 1063 IPR044977 GO:0006357
Amo03g1924 1072 ProSiteProfiles DDT domain profile. 308 367 IPR018501 -
Amo03g1924 1072 SMART testlast3 308 367 IPR018501 -
Amo03g1924 1072 Pfam DDT domain 311 364 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1924 Amo-Chr3 65702620 65709109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1924 185 534 Homeobox Transcription Factor Family AT1G28420 29.668 1.61e-40 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Amo03g1924 WSD 2.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1924 - - aprc:113853612 1535.78