Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1878 ATGGGAAGAGGGAGAGTGGTTCTGGAGAGAATAGAGAACAAGATAAACAGGCAAGTTACATTTTCAAAGAGAAGGAGTGGTTTGTTGAAGAAAGCTTTTGAATTATCAGTGCTTTGTGATGCTGAAGTAGCACTCATCATCTTCTCTAGTCGCGGCAAGCTTTTTCAGTACAGCAGTTCTGACATCAGTGGAATTATTGAGAGGTATCGCCAATGTCGTTACAACAAGTTGTCACAGACTGGCAATTTATTTGATCAGCAATCACAGAGCTTGTACCAGGAATTCTTGAAATTAAAGGTAAAATATGAATCTCTGGAGCGAACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCCCTTGGCATGAAGGAACTGATGAACCTTGAGAAACAAGTAGAAAGAACTCTTGCACAGGCTCGACAGCTCCATATGAGGAAGCTCATAACACGACAGGCAGAATTAAGTGAAAAGGTGCACGAGGACCAGGAGCTCAACAAAAAGTTGAAATCCAAGTTAAGAGATGAATTCCCAGACCTCATTGCTGAGCACAACAACCCTATTATTCATGAGTTGAATGAAGTACAAGCCATTAATCAGTTCCAGTCTGAGACGGTCTTAAACAACACACGCATGTTTGAGCATCATAATCAGGAGGGAAAAGCAAGCGGTACAAGGCAACAAGATGGTCAGAGCAGCCATGACAAAAACAATAATGGTTGGCTTGTGTGA 729 0.4184 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSSDISGIIERYRQCRYNKLSQTGNLFDQQSQSLYQEFLKLKVKYESLERTQRHFQGEELEPLGMKELMNLEKQVERTLAQARQLHMRKLITRQAELSEKVHEDQELNKKLKSKLRDEFPDLIAEHNNPIIHELNEVQAINQFQSETVLNNTRMFEHHNQEGKASGTRQQDGQSSHDKNNNGWLV* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1878 242 MobiDBLite consensus disorder prediction 215 242 - -
Amo03g1878 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo03g1878 242 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo03g1878 242 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo03g1878 242 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Amo03g1878 242 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Amo03g1878 242 PANTHER MADS BOX PROTEIN 1 240 - -
Amo03g1878 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo03g1878 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo03g1878 242 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 240 - -
Amo03g1878 242 MobiDBLite consensus disorder prediction 222 242 - -
Amo03g1878 242 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Amo03g1878 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo03g1878 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo03g1878 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo03g1878 242 Coils Coil 122 145 - -
Amo03g1878 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1878 Amo-Chr3 61014852 61019048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1878 1 242 MADS-box Gene Family AT2G45650 43.969 6.05e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo03g1878 K-box 5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1878 K09264 - gmx:100793681 293.123