Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1844 ATGGTGGCAGGGTCAAAACCCGCCACGCCATATCAGACTGCACGTGCTAGAATAGAGAAGGCTGGTGGTGAATGCTTGACATTTGATCAAGTTGCCTTTAGAGCACCTCTTGGACAGAACACGGTCCTTTTTAGAGGCCCAAAGAACTCCAGGAAAGTTGTGAAACACTTTGGTCCTGCTGCTGGTAGAAGGAAGTTTGAGATGGCTAGAGGAAGGAGGAATAGAAAAGGACTTAGAGTTTAA 243 0.4691 MVAGSKPATPYQTARARIEKAGGECLTFDQVAFRAPLGQNTVLFRGPKNSRKVVKHFGPAAGRRKFEMARGRRNRKGLRV* 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1844 80 PANTHER 60S RIBOSOMAL PROTEIN L18 12 79 IPR000039 GO:0003735|GO:0005840|GO:0006412
Amo03g1844 80 Pfam Ribosomal protein 60S L18 and 50S L18e 12 74 IPR021131 -
Amo03g1844 80 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 12 79 - -
Amo03g1844 80 Gene3D - 10 79 - -
Amo03g1844 80 SUPERFAMILY Ribosomal proteins L15p and L18e 12 45 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1844 Amo-Chr3 58355253 58356225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1844 12 80 Cytoplasmic Ribosomal Protein Gene Family AT3G05590 64.634 2.00e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1844 K02883 - tcc:18613591 111.694