Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1842 AAGCCACTCGCAGTAGCAAAGAATGGCAAAGCAGAGAAGGACATCTTTGATGGGAACACCGTGTGGTTGCAACTTTGTTTGAAGTGCTTCCAGAAGTGGATTGGGCAGGCAAAGCGGACCCGTTCGAACTGTCGCAGTCAGATCCCACCTAAGATGGCCGAAAACCCTAGGATTAACAACCATCTGACCATTGCTATCCGTTTGGCGAGACAGATGAAGGCCACAGGGATGGTGGGTGCGGTGGCGCAGCCCAAGGTATACTTTACCACTGAGCGGGCGAAGAAGACTGGCAAGGCCAACGTGTGCAGTGATAAGATTTTTGTGACGATCCCTTCAAATTTTTTGGATCCAATCACTGCTGTGTATGATCCCAGGAACAATCGTGGTGTTCTTGTTGGGGATACTTGGGAGGATGGAACGGATTGCAGGCATTGGGGCGCCCATTTCCCTCATGTTGCGGGCATTACTGGCAAAAATGGTTTTAGTTCTCAATCTGTATCACTTTCAGGTGGCTATGTTGATGACGAGGATCATGTAGAGTGGTTCCTCTACACTGGAAGTGGTGGAAAGGACCTTATTAGTGGCAACAAACACACCAACAAAATACATTCATTTCGAATTATGTATGAAGTACCTGAGCAAATTGAAAAAGGTGCTTTTGGCTCTGCGCTTTTTGTCAAGGATCAGCATGAGAAGAATCTTGTTGTGGCCAATTTTGCAAAACTTGTTAAGAGAGAAAATAAGAATTTGAGAAAAGCTGCTGAAAGTGAAATGCGAATTGGTGAGTCCTCCAAGATTCTGATTGATGTGGGACAATGTTGCTGTGTTGGGTCTCAAACCTTTTGGGGATCTGTTAGAGCTTCTATGGGACATCGTGAACCATTCAATTTCAGATTTGTTGCTGTTGGAAATGAAAATTGTTTTCCTCATCCGAAGTGCACTATCAAGGCAATCATTCTTTAA 963 0.4496 KPLAVAKNGKAEKDIFDGNTVWLQLCLKCFQKWIGQAKRTRSNCRSQIPPKMAENPRINNHLTIAIRLARQMKATGMVGAVAQPKVYFTTERAKKTGKANVCSDKIFVTIPSNFLDPITAVYDPRNNRGVLVGDTWEDGTDCRHWGAHFPHVAGITGKNGFSSQSVSLSGGYVDDEDHVEWFLYTGSGGKDLISGNKHTNKIHSFRIMYEVPEQIEKGAFGSALFVKDQHEKNLVVANFAKLVKRENKNLRKAAESEMRIGESSKILIDVGQCCCVGSQTFWGSVRASMGHREPFNFRFVAVGNENCFPHPKCTIKAIIL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1842 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 24 206 IPR045134 -
Amo03g1842 320 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 24 206 - -
Amo03g1842 320 Gene3D Glycosidases 264 318 - -
Amo03g1842 320 ProSiteProfiles YDG domain profile. 125 301 IPR003105 -
Amo03g1842 320 Gene3D - 96 208 IPR036987 -
Amo03g1842 320 Pfam SAD/SRA domain 127 197 IPR003105 -
Amo03g1842 320 SMART G9a_1 120 231 IPR003105 -
Amo03g1842 320 SUPERFAMILY PUA domain-like 100 199 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1842 Amo-Chr3 58207500 58210685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1842 25 204 C2H2 Transcription Factor Family AT5G39550 56.316 5.58e-61 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1842 K10638 - gmx:100781044 256.144