Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1828 ATGGCATTCACTGTTTGTAGCTCTTATTGCATCACAATATCCATTGTTCTCGTAGTGTGCGGTGTTGTTGTTGTTCCCTCTCACGGAGCCACAGAATCGGAACTGCTCCTCGCCGTGAAGGATAAATTACACACCAAAGAGTTATCTTCATGGACACCATCTACGACTCCGTGTTCAGGTAGAAAAGCAAACTGGAAAGGTGTTCTTTGCAATAATGGGGTAGTAACCGGGCTGCAGCTTGAGGGTATGGGGCTCAAGGGTGTCATTGATATCGATTCTCTCAAGGGTTTACCAAATCTTAGAACCATAAGTTTCATGAATAATGAACTTGAGGGTCCAATGCCACAAATCAACAAGCTAAACGGTTTGAGGTCGGTATACCTTTCAAACAATAAGTTTTCTGGTGTTCTTCCGGACAACGCCTTCCAAGGCATGGTATGGTTGAAGAAAATCTATTTGTCAAACAATAAGCTTACGGGTCCTATTCCGGAAGGTTCTCTGACCAAATTGCCAAAGCTTATGGAGTTGAAGTTGGATGGCAATCAATTTACTGGGCCTGTTCCCAACTTGCCACAGACTTCATTGACCTCACTTAGCTTCGCAAACAACAAGTTGCAAGGCCCAATTCCAGATTCCATGTCCAAGATGCCCTCTGCTTCCTTTTCTGGTAATGAAGAGTTATGTGGACCGCCTTTGGGAGAATGTAAGAACCAGAACCAAGACCAGAATCAGAATCAGAATCAGAATAACGACGACAAGAGGAAGCACACAACCATGAGCATTGTTGTGGTTGTCGTAGCTGTGGTGGTGGCATTGATAGTGATTGCAGTAGTAATGTTCATCCTTTTTTACCGTAGGAAACAAGCGAAAAAACGAGAAACAGAATCATCGATGGAGAGTCAAGAAATAGGCGCACCGCAACTGAGGAAAGGGAAATCAAACCAATTTGGGAATGAGATCAGAAGCAGGTCAATTAGATCGGTAAGCTCCAACCACAGCAGAAGAGGAGGGGATCACATGAAGTTGTCGTTCATAAGGGAAGACGGAGAGAAATTCGAGCTGCACGATTTGCTGAGAGCTTCGGCTGAGATCATGGGAAGTGGATGTTTCAGTTCTTCATACAAGGCTTCTCTACCCAAAGGGCAAATGATAGTGGTGAAGAGGTACAAGCAGATGAACAATGTAGGAAGGGACGAGTTCCATGAACACATGAGAAGGATTGGAAGGTTGAATCACCCAAATCTGCTTCCTCTTGTGGCTTACTACTACAGAAAGGAGGAGAAGCTCTTGGTTACTGACTTAGTTAAGAATGGAAGCTTGGCTGTTCGCCTTCATGGGTACCAAAGTCTTGGACTAGAAAGTCTTGATTGGCCAGCGAGGTTGAAGATTGTGAAAGGAATAACCAAAGGTCTTGAATATCTATTCAAGGACTTGCCAAGCCTTATAGCACCACATGGAAACCTTAAATCCTGCAATATTCTTCTAACAGAATCTCTTGAGCCACTCCTCTGTGACTACGGATTGATCCCACTTATAAACCAGGAACTCGCCAAGGACATCATGGTTGTGTACAAGTCCCCAGAGTACTTGAACAATGGAAGAATCACAAAGAAGACTGACGTGTGGTGCCTTGGAATCTTGATCCTGGAGATTCTCACTGGAAAGTTCCCTGAGAATTTCTTGCAGCAGGGTAAAGGGAGCGAGGTGAGTCTCGCAAGTTGGGTTCGTTCCATTGCCCCAGAAGAATGGACCAAGGAGGTCTTTGATAAGGAGTTAATGGGAGCGATCAAGACCAGTGAGGGAGAGATGGTGAAGCTGTTGAATATTGCGATGGCGTGTTGTGAAGAGGATTTGGAGAAAAGGTGGGACTTGAAAGAAGCAGTTGAGAAGATTGAAGAGATTAGAGAGAAGGATCAAGAAGATGATTTCTTCACTGTTGCTGATGATGCGGATGTAGGGTCTACAAGGACTTTGTCTGGTGAAATCAATTTCTAG 1995 0.4446 MAFTVCSSYCITISIVLVVCGVVVVPSHGATESELLLAVKDKLHTKELSSWTPSTTPCSGRKANWKGVLCNNGVVTGLQLEGMGLKGVIDIDSLKGLPNLRTISFMNNELEGPMPQINKLNGLRSVYLSNNKFSGVLPDNAFQGMVWLKKIYLSNNKLTGPIPEGSLTKLPKLMELKLDGNQFTGPVPNLPQTSLTSLSFANNKLQGPIPDSMSKMPSASFSGNEELCGPPLGECKNQNQDQNQNQNQNNDDKRKHTTMSIVVVVVAVVVALIVIAVVMFILFYRRKQAKKRETESSMESQEIGAPQLRKGKSNQFGNEIRSRSIRSVSSNHSRRGGDHMKLSFIREDGEKFELHDLLRASAEIMGSGCFSSSYKASLPKGQMIVVKRYKQMNNVGRDEFHEHMRRIGRLNHPNLLPLVAYYYRKEEKLLVTDLVKNGSLAVRLHGYQSLGLESLDWPARLKIVKGITKGLEYLFKDLPSLIAPHGNLKSCNILLTESLEPLLCDYGLIPLINQELAKDIMVVYKSPEYLNNGRITKKTDVWCLGILILEILTGKFPENFLQQGKGSEVSLASWVRSIAPEEWTKEVFDKELMGAIKTSEGEMVKLLNIAMACCEEDLEKRWDLKEAVEKIEEIREKDQEDDFFTVADDADVGSTRTLSGEINF* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1828 664 MobiDBLite consensus disorder prediction 291 313 - -
Amo03g1828 664 Pfam Leucine rich repeat 122 183 IPR001611 GO:0005515
Amo03g1828 664 Pfam Protein tyrosine and serine/threonine kinase 363 630 IPR001245 GO:0004672|GO:0006468
Amo03g1828 664 SUPERFAMILY Protein kinase-like (PK-like) 363 635 IPR011009 -
Amo03g1828 664 MobiDBLite consensus disorder prediction 206 253 - -
Amo03g1828 664 SUPERFAMILY L domain-like 45 232 - -
Amo03g1828 664 PANTHER LRR RECEPTOR-LIKE KINASE 9 646 - -
Amo03g1828 664 ProSiteProfiles Protein kinase domain profile. 359 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g1828 664 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 646 - -
Amo03g1828 664 MobiDBLite consensus disorder prediction 299 313 - -
Amo03g1828 664 Gene3D Ribonuclease Inhibitor 29 191 IPR032675 -
Amo03g1828 664 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Amo03g1828 664 Gene3D Ribonuclease Inhibitor 192 239 IPR032675 -
Amo03g1828 664 Gene3D Transferase(Phosphotransferase) domain 1 435 654 - -
Amo03g1828 664 MobiDBLite consensus disorder prediction 206 221 - -
Amo03g1828 664 Gene3D Phosphorylase Kinase; domain 1 324 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1828 Amo-Chr3 57090272 57092783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1828 1 664 Receptor kinase-like Gene Family AT5G35390 50.220 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo03g1828 PK_Tyr_Ser-Thr 4.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1828 - - aip:107633360 1243.41