Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1819 ATGACTATGAATTTTAGTTCTTTAGGAAGCCAAGATCCATCAAGGATAAGACAAATTAGTAATGTAGGGTTTCCCGTTTTTTTTCCAGTGTGGAACCCTTCTCCTGGACAATATATTATACTCTACAAAACCACTGCTGCTGAGAGAAGCAAACTTTTGAGGAAATGGTATGATTTACTAATGGCTCATAAAGAAGAGCTTGCTCAACTTATGACCTTGGAGCAAGGGAAGCCTCTTAAGGAGGCTATGGGTGAGGTAAACTATGGGGCTGGCTTTATTGAATTTTCAGCTGAGGAGGCTAAACGCATATATGGGGATATAATTCCTGCTCCTATGTCTGATCGACGGTTATTTGTTCTAAAGCAGCCTGTCGGGGTTGTAGGTGCAATCACACCATGGAACTTCCCTCTGGCTATGATCACACGGAAGGTTGGTCCAGCTCTTGCATGTGGATGTACAGTGGTCATAAAGCCCTCTGAACTTACACCTCTCACTGCATTAGCTGCAGCTGAACTTGCTATTCAAGCTGGAATACCTGCGGGTGCTGTGAATGTGGTTATGGGAAATGCTCCTGAAATTGGTGATGCTTTACTTGCAAGTCCTCAGGTACGCAAAATCACATTCACAGGCTCAACAGCTGTTGGAAAGAAATTGATGGCAGGTTCTGCTGAGACAGTAAAAAAAGTATCTCTGGAACTTGGTGGCAATGCACCGTGCATAATTTTTGATGATGCTGACATTGATATTGCAGTTAAAGGAACTCTTGCAGCAAAGTACCGCAATAGTGGACAAACATGTGTGTGTGCGAACAGAATTCTTGTGCAAGAAGGTATATATGATAAATTTGCAAAGGCTTTGATTGATGCTGTTCGGAATATGAAAGTTGGGGACGGTTTTGGTGAAGATGTGGTTCAGGGCCCTCTGATCAATGAAGCTGCAGTTAAAAAGGTTGAGACCTTGCTTCAAGATGCTACATCAAAGGGGGCAAAGGTAATGCTTGGGGGTAAAAGACATAGCCTTGGATTTACCTTTTATGAACCAACAGTTGTCGGTGATGTCAACAGTGATATGCGCATATCAAGAGAGGAAGTGTTTGGACCTGTTGCACCCCTTTTGAGGTTCAAAACCGAAGAGGATGCTATCCGGATTGCCAATGACACAAATGCAGGTTTGGGTTCATATGTGTTTACAAACAGTATCCAACGCTCATGGCGTGTTGCCGAGGCTCTCGAATATGGACTTGTTGGTATTAATGAAGGAGTAATCTCGACTGAGGTGGCACCATTTGGTGGTTTTAAACAGTCGGGCCTTGGAAGAGAAGGCTCAAAGTATGGGATGGATGAATATTTGGAGATCAAGTATGTGTGCCTGGGAAACATGAAGAAAGAATAA 1392 0.4325 MTMNFSSLGSQDPSRIRQISNVGFPVFFPVWNPSPGQYIILYKTTAAERSKLLRKWYDLLMAHKEELAQLMTLEQGKPLKEAMGEVNYGAGFIEFSAEEAKRIYGDIIPAPMSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELAIQAGIPAGAVNVVMGNAPEIGDALLASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCIIFDDADIDIAVKGTLAAKYRNSGQTCVCANRILVQEGIYDKFAKALIDAVRNMKVGDGFGEDVVQGPLINEAAVKKVETLLQDATSKGAKVMLGGKRHSLGFTFYEPTVVGDVNSDMRISREEVFGPVAPLLRFKTEEDAIRIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGINEGVISTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCLGNMKKE* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1819 463 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 43 460 - -
Amo03g1819 463 SUPERFAMILY ALDH-like 28 460 IPR016161 GO:0016491
Amo03g1819 463 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 231 238 IPR029510 GO:0016491
Amo03g1819 463 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 43 453 IPR010102 GO:0009013|GO:0009450
Amo03g1819 463 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 235 424 IPR016163 GO:0016620
Amo03g1819 463 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 259 270 IPR016160 GO:0016491
Amo03g1819 463 CDD ALDH_F5_SSADH_GabD 43 457 - -
Amo03g1819 463 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 43 449 IPR016162 GO:0016491
Amo03g1819 463 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 43 460 - -
Amo03g1819 463 Pfam Aldehyde dehydrogenase family 43 455 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1819 Amo-Chr3 55502319 55511997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1819 43 463 Aldehyde Dehydrogenase Gene Family AT1G79440 80.998 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1819 K17761 - gmx:100808318 756.133