Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1814 ATGGAAATGGAATTGGAAGCTGAAGCTGAAGCTGATTTTATGACGAATGACATGCTCACACTCCCACACGATCCCTTTGATCCCAACCACATCCATGATGATGATAATTTGGCTATTGAAGGCGAAAGATGTGGAATATGCATGGATATCGTCATTGATAGGGGAGTTCTCGATTGCTGTCAGCATTGGTTCTGTTTTGTATGCATTGATAACTGGGCTACAATCACTAATCTCTGCCCACTTTGCCAGAACGAGTTTCAGTTGATCACTTGTGTACCAGTTTATGATACCATTGGAGGCAATAAAGTTGAAGATGACTCATTCTCCAGAGATGACGAATGGTCCATTGAAGGGAAGAACAATACATTATCGTTTCCCTCCTACTACATTGATGAAAATGCAGTTACTTGTTTGGATGGTGATGGCTGCAAAGTTCGAAGTGGATTGGAAACTATTGAAGGAGATTCTGATCTTGATACATCAATTGCATGTGATTCATGTGATACATGGTAA 513 0.4055 MEMELEAEAEADFMTNDMLTLPHDPFDPNHIHDDDNLAIEGERCGICMDIVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGGNKVEDDSFSRDDEWSIEGKNNTLSFPSYYIDENAVTCLDGDGCKVRSGLETIEGDSDLDTSIACDSCDTW* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1814 170 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Amo03g1814 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 106 IPR013083 -
Amo03g1814 170 PANTHER RING FINGER PROTEIN 41, 151 114 170 - -
Amo03g1814 170 PANTHER RING/U-BOX PROTEIN 114 170 - -
Amo03g1814 170 ProSiteProfiles Zinc finger RING-type profile. 44 83 IPR001841 -
Amo03g1814 170 SMART ring_2 44 82 IPR001841 -
Amo03g1814 170 Pfam Ring finger domain 43 83 IPR001841 -
Amo03g1814 170 SUPERFAMILY RING/U-box 34 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1814 Amo-Chr3 55239696 55241219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1814 38 86 C3H Transcription Factor Family AT2G39100 34.615 4.44e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1814 - - adu:107479708 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3251 13 102302099 102309677 Amo03g1814 03 55239696 55241219 hybridization