Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1802 ATGAGTCTGGGAATGGTGGGTTCGATTGTGCATGGAATGGCTCTTCCTGTTGGATACCTCTTGTTAGGAAAAGCTCTTAATGCTTTTGGCAACAATATTCATGACCAAGATGCCATGGTTAAAGCTCTTAAACAGGTTGTTCCGTACGTGTGGTACATGGCCATCGCCACATTCCCTGCTGGGATACTTGAGATTGGATGTTGGATGTATACAAGCGAAAGGCAGTTATCACGCCTAAGAATAGCATATCTAAAAGCAGTGCTTAGTCAAGAGATAGGAGCATTTGATACAGAGCTAACAAGTGGAAAAGTCATTAGTGGAATAAGCAAACACATGAGTGTCATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTTACCTCAAGCTGTTCAACATTCTTTTCCGGAATTGTGATTGCTGCCATATGCTGTTGGGAAGTGTCACTCTTGTGTTTAGTGGTTGTACCGCTTATTCTTATGATTGGAGCAACTTACACCAAGAAAATGAACACCATTTCAACGACCAAAATGTTTTTCCATTCTGAAGCTACAGCTATGATAGAGCAGACAATATCACACATAAAAACAGTATATGCTTTTGTGGGAGAGAGTTCTGCAATGAAATCCTTCAGAGAGAATATGGAGAAACAGTTCCAAATAAGCAAAGGGGAGGCGCTTGTGAAGGGAGTTGGAACAGGGATGTTTCAAACCGTAAGTTTCTGTTCCTGGGCTCTCATTGTATGGGTTGGAGCCGTTGTCGTGACAGCCGGTAGAGCGAAGGGAGGAAACATTATAGCTGCAGTGATGAGCATCCTCTTTGGTGCCATATCCATCACTTACGCGGCACCAGACATGCAAATATTCAACCAGGCAAAAGCAGCAGGATATGAAGTTTTCCAAGTGATACAAAGAAAGCCTTTAATAAGCAATGAAGCACAAGGGAGGAAGGTTACCGAGATCACAGGTGACATTGAGCTGAGGGATGTATACTTTACCTACCCATCTCGACCGGAGAAACCTATCCTTCAAGGACTATCCTTGTCAATTCCAGCAGGAAGGACAGTAGCTCTAGTTGGTAGCAGTGGTTGTGGAAAAAGCACTGTTATTTCCCTGGTTAACAGATTCTATGACCCTGCTAGAGGAGAAGTTTTTATTGATGGTCACAATATCAAGGATCTTGATCTGAAGTTCCTTCGGAGTAATATAGGGCTCGTTTCCCAAGAACCGTCACTCTTTGCAGGCACCATCAAGGATAACTTGAAAGTGGGGAAAATGGATGCAGATGATCAAGAGATACAGAAGGCAGCTGAAATGTCAAATGCACACACTTTTGTATCTCAGCTGCCGAATCAATACTTAACAGAGGTAGGACAAAGGGGAGTTCAATTATCAGGAGGCCAGAAACAGAGAATTGCAATAGCAAGAGCCATTCTTAAGAATCCTCCCATCCTTTTGCTTGATGAGGCAACTAGCGCCCTTGACACCGAGTCAGAAAAGCTGGTTCAAGAAGCACTTGAAACAGCCATGCAGGGAAGGACTGTCATCTTGATTGCACACAGACTCTCAACAGTTGTAAACGCAGATATGATTGCTGTAGTAGAGAACGGACAAGTTGTAGAAACAGGCACACACCAGAATTTGCTCGACAAAAGCGATTTCTATAGGGCATTATATAGCATGCAGAACCTTGAAGCAGCTCCTGAATCCAGCACCACAATTTCCAAAAGCAAGAGTACACACCAAGGAGATTCTACTGATGAAGCTAAACTCTCAGAGAAGCAGAGAGAGACTCAAATAAATCCCATGGAGGATTCTGAGCTAAAGGGACAAGAGACAAGAAAAAGAAATATATTTTTCAGAATCTGGTTTGGTCTGAAACCGAGGGAGATGGCAAAGATTGCTTTTGGCTCAGCTGCAGCAGCTTTCTCTGGTGTGTCGAAGCCAGTTTTCGGGTACTGCATCATCACTATTGGAGTTGCATACTTCGATCCTGATGCAAAAAGGAAGGTTGGCTATTATTCAGCCTTCTTCTCTGCAATAGGGCTGCTTTCATTACTCAGTAACACAATCCAGCATTACTTCTATGGAGTAGTTGGAGAAAAGGCCATGGCGAATTTCAGACATGCTCTATATAAAGGTGTGCTCCGTAACGAAGTAGGCTGGTTTGATAGATCTGATAACACGGTTGGTTCATTAACTTCGCGAATCATCAGTGACACTGCCCTGGTCAAAATCATAATTGCTGATCGGATGGCTGTGATTGTGCAATGCATTTCCTCCATATTGATAGCAACAGGTGTGAGCATGTATGTCGACTGGAGAATGGCTTTGGTAGCTTGGGCTGTGATGCCTTGCCACTTCATTGGCGGTCTCATTCAAGCAAAGTCTGCCAAAGGCTTTTCAGGTGACTATGCTGCTTCACATTCTGAGCTTGTTGCTCTTGCATCTGAGTCTGCAGCCAACATAAGGACTATAGCGTCATTTTGCCATGAAGAACATGTAATCATGAAAGCAAAGACATCTCAGGAAATTCCAATGAGAAAGTACCGGAATGAAAGTATCAAATACGGGATCGTTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTTGCTCTGTGGTATACAACAATTCTAGTTGAAAGACGTCAAGCCACCTTTAAAAATGGAATACGAGCATACCAAATCTTTTCTCTCACTGTTCCCTCTATCACAGAATTATATACACTGATCCCAACTGTCATCTCAGCTATCAATGTACTAACCCCAGCATTCCAAACGCTTGATCGGAAAACCGAAATCGAACCAGATACACAGGATGATTCCCAACCGGAGAGGATCCTAGGAGAAGTTAAATTTGAACATGTAAAATTCAACTACCCTTCAAGACCTGCAGTCACTGTTCTGGACAACTTCAGTTTACAAATTGAAGCTGGATCAAAGGTGGCTTTTGTAGGACCAAGTGGTGCAGGAAAATCCTCTGTTTTGGCCCTTATACTAAGATTTTATGATCCAGGGGCAGGAATGGTATCAATCGATGGGAGAGATATACGGGGATATAATCTAAGATGGCTGAGGACTCAAATAGGGCTAGTACAACAAGAACCACTTCTTTTTAACTGCTCTATAAGAGACAACATTTGCTATGGACACAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCCAGAGAAGCAAACATACATGAATTTGTAAGTAATCTACCAGATGGATATAACACGGTTGTTGGGGAAAAAGGGTGCCAGCTTTCAGGAGGTCAAAAGCAAAGAATAGCCATTGCCAGAACCTTGCTAAAGAAGCCTGCAATTTTACTCCTAGATGAAGCAACAAGTGCTCTTGATGCTGAGTCGGAAAGAACTATTGTGAGCGCTTTAAAAGCAATAAATCTCAAGGAGGATAGTGGCTTGTGTTCAAGGACTACCCAGATTACGGTAGCTCACAGGCTTTCCACAGTAATAAATTCGGATACCATAATTGTCATGGACAAGGGTAAGATTGTAGAGATGGGATCCCACTCAACCCTAATAACAACTGGAGAAGGACTCTATTCGAGGTTATTCAAGCTACAGAGCTTTGATGAATCCTCGTAA 3618 0.4295 MSLGMVGSIVHGMALPVGYLLLGKALNAFGNNIHDQDAMVKALKQVVPYVWYMAIATFPAGILEIGCWMYTSERQLSRLRIAYLKAVLSQEIGAFDTELTSGKVISGISKHMSVIQDAIGEKLGHFTSSCSTFFSGIVIAAICCWEVSLLCLVVVPLILMIGATYTKKMNTISTTKMFFHSEATAMIEQTISHIKTVYAFVGESSAMKSFRENMEKQFQISKGEALVKGVGTGMFQTVSFCSWALIVWVGAVVVTAGRAKGGNIIAAVMSILFGAISITYAAPDMQIFNQAKAAGYEVFQVIQRKPLISNEAQGRKVTEITGDIELRDVYFTYPSRPEKPILQGLSLSIPAGRTVALVGSSGCGKSTVISLVNRFYDPARGEVFIDGHNIKDLDLKFLRSNIGLVSQEPSLFAGTIKDNLKVGKMDADDQEIQKAAEMSNAHTFVSQLPNQYLTEVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDTESEKLVQEALETAMQGRTVILIAHRLSTVVNADMIAVVENGQVVETGTHQNLLDKSDFYRALYSMQNLEAAPESSTTISKSKSTHQGDSTDEAKLSEKQRETQINPMEDSELKGQETRKRNIFFRIWFGLKPREMAKIAFGSAAAAFSGVSKPVFGYCIITIGVAYFDPDAKRKVGYYSAFFSAIGLLSLLSNTIQHYFYGVVGEKAMANFRHALYKGVLRNEVGWFDRSDNTVGSLTSRIISDTALVKIIIADRMAVIVQCISSILIATGVSMYVDWRMALVAWAVMPCHFIGGLIQAKSAKGFSGDYAASHSELVALASESAANIRTIASFCHEEHVIMKAKTSQEIPMRKYRNESIKYGIVQGFSLCLWNIAHAVALWYTTILVERRQATFKNGIRAYQIFSLTVPSITELYTLIPTVISAINVLTPAFQTLDRKTEIEPDTQDDSQPERILGEVKFEHVKFNYPSRPAVTVLDNFSLQIEAGSKVAFVGPSGAGKSSVLALILRFYDPGAGMVSIDGRDIRGYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGHNGASESEIVEVAREANIHEFVSNLPDGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVSALKAINLKEDSGLCSRTTQITVAHRLSTVINSDTIIVMDKGKIVEMGSHSTLITTGEGLYSRLFKLQSFDESS* 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1802 1205 MobiDBLite consensus disorder prediction 580 609 - -
Amo03g1802 1205 Gene3D - 943 1204 IPR027417 -
Amo03g1802 1205 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 953 1197 IPR003439 GO:0005524
Amo03g1802 1205 MobiDBLite consensus disorder prediction 568 609 - -
Amo03g1802 1205 CDD ABC_MTABC3_MDL1_MDL2 953 1199 - -
Amo03g1802 1205 CDD ABC_MTABC3_MDL1_MDL2 324 561 - -
Amo03g1802 1205 Pfam ABC transporter 971 1120 IPR003439 GO:0005524
Amo03g1802 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 946 1199 IPR027417 -
Amo03g1802 1205 Gene3D ABC transporter type 1, transmembrane domain 1 914 IPR036640 GO:0005524|GO:0016021
Amo03g1802 1205 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 3 290 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo03g1802 1205 CDD ABC_6TM_Pgp_ABCB1_D2_like 648 936 - -
Amo03g1802 1205 PANTHER OS08G0153200 PROTEIN 3 1200 - -
Amo03g1802 1205 ProSitePatterns ABC transporters family signature. 463 477 IPR017871 GO:0005524
Amo03g1802 1205 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 1200 IPR039421 -
Amo03g1802 1205 Pfam ABC transporter transmembrane region 638 892 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo03g1802 1205 Pfam ABC transporter transmembrane region 3 275 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo03g1802 1205 SUPERFAMILY ABC transporter transmembrane region 2 306 IPR036640 GO:0005524|GO:0016021
Amo03g1802 1205 Gene3D - 314 562 IPR027417 -
Amo03g1802 1205 SMART AAA_5 351 543 IPR003593 -
Amo03g1802 1205 SMART AAA_5 980 1174 IPR003593 -
Amo03g1802 1205 SUPERFAMILY ABC transporter transmembrane region 621 938 IPR036640 GO:0005524|GO:0016021
Amo03g1802 1205 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 298 - -
Amo03g1802 1205 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 324 560 IPR003439 GO:0005524
Amo03g1802 1205 Pfam ABC transporter 342 491 IPR003439 GO:0005524
Amo03g1802 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 561 IPR027417 -
Amo03g1802 1205 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 634 918 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo03g1802 1205 ProSitePatterns ABC transporters family signature. 1092 1106 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1802 Amo-Chr3 54723403 54737034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1802 1 1201 Calmodulin-binding Proteins AT2G36910 41.148 0.0 937