Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1770 ATGAACATGGGGAGAACACTTGCACAGTACAGTGCAGACGCTGAGATTCTTGCAGAGTTCGAGCAATCAAACGTGTCCGGTAAATCATTTGACTACTCAAAGTCAGTGGTTGACCCACCGAAATCAGTCTCTGAGGAGAAGATGACTGCCTACTTGTCAAGAATCCAAAGGGGCGGACTCATCCAGCCCTTTGGCTGCATGCTGGCAGTCGAAGAACCGACTTTCAACATCATTGGCTACAGCCAGAATTCATTTCACCTCTTGGGTGTCAAGACTCAGTCCGACACCGAAGAGTTAATGGGTGGTCTTCTTGGAGTTGATGCCACTACACTCTTCACTCCTGCTTCCGGGGCTTCGCTTGCGAAAGCTGTGGCATCGAGGGAAATCTCGCTTCTTAATCCTGTTTGGGTAGTTATGGTGTATAAATTCCACGAGGACGATCACGGGGAGGTTGTTTCGGAGATTAGGAGGTTGGATTTGGAGTCTTATTTGGGCCTGCACTACCCTGCCACTGATATCCCTCAAGCCTCAAGATTCTTGTTCAGGCAAAATCGCGTTCGGATGATTTGTGATTGTAATGCTAAGCCGGTTAAGGTAACTCAGAACCAAGAGTTGAGTCAACCACTTTGCTTGGTGAACTCAACTCTGAGGGCGCCACATGGTTGTCACACGCAGTACATGGCTAACATGGGCTCCATTGCTTCTCTGGTTATGTCAATTGTGGTAAATACCAAAGATTCCATGAAGCTATGGGGTTTGCTAGTGTGCCATCACACTGCGCCGCGCTATGTGCCTTTTCCGGTTCGCTACGCTTGTGAATTTCTTATGCAGGCTTTTGGAGTGCAGCTTTACATGGAGATTCAGTTAGCAGCGCAAATGGCAGAGAAAAGGATTCTCAAGACACAAACTTTGCTGTGTGACATGCTCCTTCGCGACGCGCCGTTTGGGATTGTTACTCAGTCTCCTAATATCAAGGATCTTGTCAAGTGTGATGGGGCTGCCCTGTATTATGATGGGAACTGTTGGTTGTTAGGCACAACGCCGTCGGAATCACAGGTAAAAGACATTGCTGAATGGTTGCTTAGTACTCACGGTGACTCGACCGGTTTGAGTACAGACAGTTTGGCTGATGCTGGTTATCCTGGGGCTGTTTTACTTGGGGATGCAGTGTGTGGCATGGCGATGGCGCGAATCAGTTCGAGGCATTTCTTGTTCTGGTTCCGATCTCACACTGCTAAGGAAGTTAAGTGGGGAGGGGCCAAACACCATCCTGAGGATAAGGATGATGGAAGGAAAATGAATCCAAGATCATCATTCAAAGCATTTCTTGAAGTTGTTAAGAGCAAAAGTTCGCCTTGGGAGGCTTCCGAAATCAATGCTATTCACTCATTGCAACTTATAATTAGAGATTCATTTCACAATTCAGAGAATAGTGGTATTAAGGCTATGAACTACATACAGAGAAGTGATGCTTCAAGTGGTGGGATTGATGAGCTAAGTTCAGTAGCATTTGAAATGGTGAGGTTAATTGAGACGGCAACTGTGCCGATTTTCGGGGTTGACACAGGTGGCCTAATCAATGGTTGGAATGTGAAAATTGCGGAATTGACAGGTTTGCTGGCAAATGAAGCTATTGGAAAATCACTAGTGAATGAAGTAGCGCATGCAGACTCGCGCAACAATCTTGAAAATATTCAAAGTAAAGCCCTGCAAGGCTTAGAAGACAAGAATTTTGAGTTGAAATTGAAACATTTTGGGAATCAACAAGAAAATGGAGTTGTATATCTCATAGTGAATGCTTGCACAAGTAGAGATTACACAAATGCTGTTGTTGGGGTATGCTTTGTAGGCCAAGATATCACTTGTGAGAAAGTTGTTCTAGACAAATTTGTCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCTCAATCCGCTGATTCCGCCGATATTTGCTTCTGACGAGAGCGCCTGCTGCTCCGAATGGAATGCAGCCATGGAAAGGATAACTGGCTGGAAGAGAGACGAAGTCATAGGAAAACTTCTTCCCGGGGAAATCTTTGGAAGCTTTGTTAGACTGAAAGGTCAAGATACACTGACTAACTTCATGATCTTGCTTTACCGGGGAATTAGCGGACAAGAATTCGAGAAGTTTCCCTTCGGATTTTTTGATAGGAACGGAGAGTTTATAGAGGCTTACATCACTGCTAACAAGAGGATCGATACGAGTGGGAACATGATTGGCTGTTTCTGCTTCTTGCAGATTGTATCTCGCGATCCGAATCAGCCTTCGGATGGACAAAATCTTCCTCAAGGGAGGAAGAGTATATCTGAGTCTAAGGAGTTTGCTTATATATTACAAGAGATGATGAATCCTTTAAACGGTATTCGGTTTACGCATAAGCTTCTGGAGAAAACAGCTGTCTCAGAAAGCCAGAAACAGTTTCTTGACACTAGTGCTGCTTGTGAAAGACAGATAATGGCAATTATTGAGGAAACATACATAGGAAGTATCAATGAAGGCAGTGTGCAGCTAAACATGGAGGAATTTCTTCTTGGGAGTATTCTAGATGCCATTGTGAGTCAAGTGATGCTGTTGGTGAGAGGAAAAAGCTTGCAGCTGTTTCATGAAATTCCTGATGAAATGAAAACTCTTGCTCTGTATGGTGATCAAATAAAGCTTCAAGTGGTCTTATCTGACATTCTGCTTAATGTAGTCAACTATACACCATCTCCAAATGGCTGGGTTGAAATCAAGATTTCACCTGGTTTGAAGATAATTCAGGACGGCCATGAGTTTATCCATTTGAAGTTCAGAATGAGCCATTCCGGTCAAGGTCTTCCTTCTAACACACTTCAGGATATGTTTGAAGAAGGGACTCAATGGACTACACAAGAAGGTTTAGGGCTATATATGTCAAGAAAAATGCTTAGTAGGATGAATGGTCATGTTCACTATGCGAGAGAACAAAATAAGTGCTACTTCCTCATTGATCTTGAACTTAGAACAAGAAAAGAAAGGCAAAGGAATTTGCAAGCGGAGACAAGCATGTTGAGTTAA 3063 0.4378 MNMGRTLAQYSADAEILAEFEQSNVSGKSFDYSKSVVDPPKSVSEEKMTAYLSRIQRGGLIQPFGCMLAVEEPTFNIIGYSQNSFHLLGVKTQSDTEELMGGLLGVDATTLFTPASGASLAKAVASREISLLNPVWVVMVYKFHEDDHGEVVSEIRRLDLESYLGLHYPATDIPQASRFLFRQNRVRMICDCNAKPVKVTQNQELSQPLCLVNSTLRAPHGCHTQYMANMGSIASLVMSIVVNTKDSMKLWGLLVCHHTAPRYVPFPVRYACEFLMQAFGVQLYMEIQLAAQMAEKRILKTQTLLCDMLLRDAPFGIVTQSPNIKDLVKCDGAALYYDGNCWLLGTTPSESQVKDIAEWLLSTHGDSTGLSTDSLADAGYPGAVLLGDAVCGMAMARISSRHFLFWFRSHTAKEVKWGGAKHHPEDKDDGRKMNPRSSFKAFLEVVKSKSSPWEASEINAIHSLQLIIRDSFHNSENSGIKAMNYIQRSDASSGGIDELSSVAFEMVRLIETATVPIFGVDTGGLINGWNVKIAELTGLLANEAIGKSLVNEVAHADSRNNLENIQSKALQGLEDKNFELKLKHFGNQQENGVVYLIVNACTSRDYTNAVVGVCFVGQDITCEKVVLDKFVKLEGDYKAIIQSLNPLIPPIFASDESACCSEWNAAMERITGWKRDEVIGKLLPGEIFGSFVRLKGQDTLTNFMILLYRGISGQEFEKFPFGFFDRNGEFIEAYITANKRIDTSGNMIGCFCFLQIVSRDPNQPSDGQNLPQGRKSISESKEFAYILQEMMNPLNGIRFTHKLLEKTAVSESQKQFLDTSAACERQIMAIIEETYIGSINEGSVQLNMEEFLLGSILDAIVSQVMLLVRGKSLQLFHEIPDEMKTLALYGDQIKLQVVLSDILLNVVNYTPSPNGWVEIKISPGLKIIQDGHEFIHLKFRMSHSGQGLPSNTLQDMFEEGTQWTTQEGLGLYMSRKMLSRMNGHVHYAREQNKCYFLIDLELRTRKERQRNLQAETSMLS* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1770 1020 Gene3D PAS domain 649 761 - -
Amo03g1770 1020 PANTHER TWO-COMPONENT HISTIDINE KINASE 138 1009 - -
Amo03g1770 1020 SUPERFAMILY PYP-like sensor domain (PAS domain) 508 616 IPR035965 -
Amo03g1770 1020 SMART HisKA_10 778 842 IPR003661 GO:0000155|GO:0007165
Amo03g1770 1020 CDD PAS 513 620 IPR000014 -
Amo03g1770 1020 Pfam PAS fold 636 755 IPR013767 GO:0006355
Amo03g1770 1020 Pfam PAS fold 505 620 IPR013767 GO:0006355
Amo03g1770 1020 SUPERFAMILY GAF domain-like 124 283 - -
Amo03g1770 1020 SUPERFAMILY PYP-like sensor domain (PAS domain) 650 752 IPR035965 -
Amo03g1770 1020 PANTHER PHYTOCHROME E 5 137 - -
Amo03g1770 1020 SMART gaf_1 117 297 IPR003018 GO:0005515
Amo03g1770 1020 SMART pas_2 504 571 IPR000014 -
Amo03g1770 1020 SMART pas_2 635 705 IPR000014 -
Amo03g1770 1020 Pfam His Kinase A (phospho-acceptor) domain 780 834 IPR003661 GO:0000155|GO:0007165
Amo03g1770 1020 Gene3D - 123 290 IPR029016 -
Amo03g1770 1020 TIGRFAM sensory_box: PAS domain S-box protein 509 624 IPR000014 -
Amo03g1770 1020 Pfam PAS fold 50 138 IPR013654 GO:0006355
Amo03g1770 1020 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 843 1002 IPR036890 -
Amo03g1770 1020 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 124 277 IPR016132 -
Amo03g1770 1020 SUPERFAMILY GAF domain-like 295 472 - -
Amo03g1770 1020 SUPERFAMILY PYP-like sensor domain (PAS domain) 55 148 IPR035965 -
Amo03g1770 1020 SMART HKATPase_4 890 1004 IPR003594 -
Amo03g1770 1020 CDD HATPase_Phy-like 889 1002 IPR044767 -
Amo03g1770 1020 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 890 1000 IPR003594 -
Amo03g1770 1020 Gene3D - 823 996 IPR036890 -
Amo03g1770 1020 Pfam Phytochrome region 300 475 IPR013515 GO:0006355|GO:0009584
Amo03g1770 1020 PANTHER TWO-COMPONENT HISTIDINE KINASE 5 137 - -
Amo03g1770 1020 Pfam GAF domain 138 287 IPR003018 GO:0005515
Amo03g1770 1020 ProSiteProfiles Histidine kinase domain profile. 785 1004 IPR005467 -
Amo03g1770 1020 ProSiteProfiles PAS repeat profile. 636 714 IPR000014 -
Amo03g1770 1020 Gene3D - 291 475 IPR043150 -
Amo03g1770 1020 PANTHER PHYTOCHROME E 138 1009 - -
Amo03g1770 1020 Gene3D PAS domain 508 623 - -
Amo03g1770 1020 PRINTS Phytochrome signature 217 238 IPR001294 GO:0006355|GO:0009584
Amo03g1770 1020 PRINTS Phytochrome signature 524 539 IPR001294 GO:0006355|GO:0009584
Amo03g1770 1020 PRINTS Phytochrome signature 435 453 IPR001294 GO:0006355|GO:0009584
Amo03g1770 1020 PRINTS Phytochrome signature 317 337 IPR001294 GO:0006355|GO:0009584
Amo03g1770 1020 PRINTS Phytochrome signature 505 521 IPR001294 GO:0006355|GO:0009584
Amo03g1770 1020 PRINTS Phytochrome signature 402 421 IPR001294 GO:0006355|GO:0009584
Amo03g1770 1020 PRINTS Phytochrome signature 598 615 IPR001294 GO:0006355|GO:0009584
Amo03g1770 1020 PRINTS Phytochrome signature 618 638 IPR001294 GO:0006355|GO:0009584
Amo03g1770 1020 PRINTS Phytochrome signature 132 151 IPR001294 GO:0006355|GO:0009584
Amo03g1770 1020 CDD HisKA 778 833 IPR003661 GO:0000155|GO:0007165
Amo03g1770 1020 ProSitePatterns Phytochrome chromophore attachment site signature. 217 226 IPR013516 -
Amo03g1770 1020 ProSiteProfiles PAS repeat profile. 502 573 IPR000014 -
Amo03g1770 1020 CDD PAS 647 755 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1770 Amo-Chr3 51578889 51584303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1770 8 137 Histidine Kinase Gene Family AT4G18130 58.519 4.62e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1770 K12123 - gmx:100808192 1495.72