LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo03g1769	ATGAAGCAGTCTTTTGATCCTTCATGTTTGGGTGTTTCAAAGATTCCATCGATAAATATACCTAGAGGAGTGGGGTGCAGTGCACGAGGGGTTTCATCTGGATCTGATTTATACCATGCGTCATCTGATGCTAGTCTCTTTTCCAGTTCATTACCTGTTCTTCCACACGAAAAGTTGAACATAAATGATACTGAAAATGGTTATCAATCTGTTGATGACATCTCATCTGGCTTTGAAAAGCTTCAAGACAAGGGTTCATTAGAAGGTGTCGGTGCTCATGCAGTGGGAACCACGCTTCCTGATGATGAAGASGAGCTWTTGGCRGGCATAATGGATGATTTTGATCTAAGTGGTTTACCTGGTTCTCTTGAGGACTTGGAAGAGTATGATCTTTTTGGAGATATGGATCTAGATCCTGATCAGGATGGTTTCAGTGCGGGCATGTCCAAATTGAACTTCTCCGATAGTGTTGTTAGCAACGGTTTGCCTCATTATTCTTTTCCTAATGGTGTTGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACGCTATTTGTTCGAAATATTAACAGCAACGTGGAGGATTCAGAGCTGAGAGCTCTTTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGTTTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGSATTACAAAACAAACCTCTGCGMCGCAGGAAACTTGACATACATTTCTCAATACCYAAGGATAACCCATCAGACAAGGATATCAACCAAGGAACCTTGGTGGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTCCGTCAAATATTTGGGGCTTATGGAGAAGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTCATTGAATATTATGATGTCAGAGCTGCAGAAGCAGCACTAAAATCATTAAATAGAAGTGACATAGCTGGTAAACGGATAAAGCTGGAGCCTAGTCGGCCTGGAGGAGCTCGTCGAAATTTATTGCTCCAACTAAATCAAGAGCTTGATCAAGATGAAGCTCGGAACTTTCGGTATCAAGTGAGTTCACCTGTGGCCAACTCTCCACCAGGTAACTGGATGCAGTTCAATAGTCCTGTCGAGCAGAATTCTATGCAAACGATCAGTCATTCTCCTGGCTCTAGGATCATGAGCCCAACAACTGGTAGCCACTTGCCAGGGCTGGCTTCAATTTTGCAACCTCAGGTATCGAATACTGTGAAGGGTGCAACTATTGACAAGGACTTTGGAAGGAGCAATCATGGAGAGCACATTTTTACCAGTGTGAATTCAACGCAAGGAGCTACTTTTCAGTCACATTCACTTCCAGAGCCCAAATTCAGCCAATATCATGGATCTTTGTCCTTGTTTGGTCCATCAACATCAAAATCAAATGAATCTTCGATGGAAACCTTATCTGGGGCACAATTTTTATGGGGAAGTCCAACCCTTTACTCGGAACGTAATAAGCCTTTAGCTTGGCCAAGACCAGCTGCGGTGCATCCATTTACATCAAATGGCAAGGGGCATGGCTTCCCATACTCAAGTCAAAGTACTTCCTACGTTGGGGCATCCCACCATCATAACAATCATCATGTTGGTTCTGCTCCATCAGGTTTGCCACTAGAGAGGCACTTTGGTTTTCCCGAGTCACCTGAAACTTCGATCATGAATAATGTCGGTTATGGAGGCATGGGTCTGGGGCACACTGATGGAAATTACGTGGTTAAAACAAGTGGGCCTGTAAATGCTGGCATTACTATTCCGAGAAATATTTCTGAGAACGGTTCATCAAACCTTAGAATGAGATCTTCTCCTAGGCTTAGCCCTGTGTTTTTGGGTAGTGGTCCATATGCAGGACTACCACCTACCACCATGGATAGTTTGACCGACCGTTCTCAGAGCAGATGGATTGAGAACAATGGAAGCCAAGTTGATAGCAAGAAGCAATTCCAGCTTGATTTGGATAAGATTAAATGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATTCCAAATAAGTACACGTCAAAAATGTTATTAGCTGCCATTGATGAAAATCACAAGGGTACATATGATTTTCTCTATCTCCCAATTGACTTTAAGAATAAATGCAATGTGGGATATGCATTTATCAATATGTTGTCACCCTCTCTTATTATTCCATTCTATGAGACATTCAATGGGAAGAAATGGGAGAAGTTTAATAGTGAAAAGGTTGCATCTTTGGCATATGCTCGAATACAAGGGAAGACTGCACTTGTGAGCCATTTCCAAAATTCAAGTTTGATGAACGAAGACAAGCGCTGCCGCCCAATTCTCTTCCATTCAGAGGGTCCTGAAACCAGTGATCAGATCATACAAGAGCATCTTCCCTCCAGCATTTTGGAATGTTCAGGCACTTAA	2481	0.422	MKQSFDPSCLGVSKIPSINIPRGVGCSARGVSSGSDLYHASSDASLFSSSLPVLPHEKLNINDTENGYQSVDDISSGFEKLQDKGSLEGVGAHAVGTTLPDDEXELLAGIMDDFDLSGLPGSLEDLEEYDLFGDMDLDPDQDGFSAGMSKLNFSDSVVSNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRXLQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLLLQLNQELDQDEARNFRYQVSSPVANSPPGNWMQFNSPVEQNSMQTISHSPGSRIMSPTTGSHLPGLASILQPQVSNTVKGATIDKDFGRSNHGEHIFTSVNSTQGATFQSHSLPEPKFSQYHGSLSLFGPSTSKSNESSMETLSGAQFLWGSPTLYSERNKPLAWPRPAAVHPFTSNGKGHGFPYSSQSTSYVGASHHHNNHHVGSAPSGLPLERHFGFPESPETSIMNNVGYGGMGLGHTDGNYVVKTSGPVNAGITIPRNISENGSSNLRMRSSPRLSPVFLGSGPYAGLPPTTMDSLTDRSQSRWIENNGSQVDSKKQFQLDLDKIKCGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKTALVSHFQNSSLMNEDKRCRPILFHSEGPETSDQIIQEHLPSSILECSGT*	827

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo03g1769	826	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	271	344	IPR000504	GO:0003723
	Amo03g1769	826	SUPERFAMILY	RNA-binding domain, RBD	690	774	IPR035979	GO:0003676
	Amo03g1769	826	Gene3D	-	175	269	IPR012677	-
	Amo03g1769	826	MobiDBLite	consensus disorder prediction	546	572	-	-
	Amo03g1769	826	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	273	338	IPR000504	GO:0003723
	Amo03g1769	826	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	188	252	IPR000504	GO:0003723
	Amo03g1769	826	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	3	821	-	-
	Amo03g1769	826	Gene3D	-	270	362	IPR012677	-
	Amo03g1769	826	CDD	RRM2_MEI2_like	270	340	-	-
	Amo03g1769	826	Pfam	RNA recognition motif 2	688	784	IPR007201	-
	Amo03g1769	826	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	186	259	IPR000504	GO:0003723
	Amo03g1769	826	SMART	rrm1_1	187	255	IPR000504	GO:0003723
	Amo03g1769	826	SMART	rrm1_1	690	766	IPR000504	GO:0003723
	Amo03g1769	826	SMART	rrm1_1	272	340	IPR000504	GO:0003723
	Amo03g1769	826	MobiDBLite	consensus disorder prediction	394	416	-	-
	Amo03g1769	826	SUPERFAMILY	RNA-binding domain, RBD	183	346	IPR035979	GO:0003676
	Amo03g1769	826	PANTHER	PROTEIN MEI2-LIKE 2	3	821	-	-
	Amo03g1769	826	CDD	RRM3_MEI2_like	691	776	IPR034454	-
	Amo03g1769	826	CDD	RRM1_MEI2_like	185	261	IPR034453	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo03g1769	Amo-Chr3	51517240	51524696	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo03g1769	181	379	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.333	4.40e-07	51.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo03g1769	-		-	gmx:100800877	1368.6