Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1719 ATGACTTGGAAAGAATTGAACGAGGAGCCGTATGAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAAGTCTGCCTTACGTAAAGTTGCCAGAGTATGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAATAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGTCGTTCTAGTGCGTTGTAG 303 0.429 MTWKELNEEPYEGDLSVNFSTITPKKPKSALRKVARVCLTSGFEITAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1719 100 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 2 99 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo03g1719 100 PRINTS Ribosomal protein S12 signature 24 39 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo03g1719 100 PRINTS Ribosomal protein S12 signature 9 24 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo03g1719 100 PRINTS Ribosomal protein S12 signature 40 59 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo03g1719 100 PRINTS Ribosomal protein S12 signature 76 92 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo03g1719 100 PRINTS Ribosomal protein S12 signature 59 76 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo03g1719 100 PRINTS Ribosomal protein S12 signature 92 100 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo03g1719 100 CDD Ribosomal_S12 21 92 IPR005679 GO:0003735|GO:0006412|GO:0015935
Amo03g1719 100 Pfam Ribosomal protein S12/S23 6 95 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo03g1719 100 Gene3D - 2 99 IPR012340 -
Amo03g1719 100 TIGRFAM rpsL_bact: ribosomal protein uS12 5 97 IPR005679 GO:0003735|GO:0006412|GO:0015935
Amo03g1719 100 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 12 99 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo03g1719 100 PANTHER 30S RIBOSOMAL PROTEIN S12-B 12 99 - -
Amo03g1719 100 SUPERFAMILY Nucleic acid-binding proteins 4 97 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1719 Amo-Chr3 49185122 49185463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1719 22 81 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 44.118 1.05e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1719 K02950 - ghi:121211253 171.785