Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1678 ATGGAGCTGGTGCTTCAGGACAGTAAGGCAAAACCTAATGTGATTAAACGTGTGCACTGTGAATGGCAGGGTCATAGGTTGCAAGCTTCGATACCAAAGCCATTGGTTAAGAAGTGGAAGGATGTCATAATGGAGTTTCAGATGTACACGATGAAAAATTTTGTTGTTTTGGATAACACTACATACCCCAAGGTAACTCCGGATAAATATATATTGGTTTTCTCACACCGGACCAGGGTTCATCACGTTGAACATCCAAGCTTTCCACTTGATGCCTTTCGCTTGAAGTCATTTAAGGAATTGCTTACGGCTGATAAGTTGGACGACTCTGAACTTATTGATATAATTGGTAAAGTAGTAGGCAAAGAGGATCCCAGGGATTTGGTAACCAGCAAAGGGGTGGAGACTAAACGTTTGGCCAAAATCCTACAAGATTTAGACAACAATAAGATTAGTTGTGCTCTGTTTGGTAAAATGGTAGATGAGCTTTTACCTCATCTTCACGATGGAAGGGTTGAACCTCTCATTGTAGTGCTCCAGTATTTTAAACCCAATAGATGGAATGGTAAAACATCTGTCCAGAGTCATTTCTATGTTTCCAAGCTGCACATCAATGATGGTTTAAAAGAAGTTGTTGGATTCCGAAATAGATTGCTTAGCGGAGTGGCTGTAAGTTCCTCAAGGATTAGCCAAGTTTCATCTCAAGGGGGATGGTCTGGAGCTGATGAGATAAACCAAGGTGCTGTTTTGGTGAAGACTATTGAGCAAGCACTTAATGTTAAAGAGGAAGGTCCGATATGGATATGTGCAAGCATTGTATCTTTAAATGTTGGCAAGGATGATTGGTTTTACAAATCATGCAGGAAATGTCCAAAAAAAGTTGATACTCCTATTGGAAATAGATATGAATGTACCAAGTGTGGACACACTCATGGTTGTGCTTCTTTGAGGTTCAAGGTACAGGTCTTGGTCCACGATGGAACTGGGAGCATCACCCTCTTACTTTGGGATAAGGAAACAACTCAACTTTGTGGAAAGAGAGCTGAACAAGTAATGGAGAATGATGTTATAGGTGACGATGCTTATCCACCCACCTTTGATAACATGATGGATAGGAAAGTTCTATTTAAGATTAATGAAATTGGGGGCAGCAACTCCTTGGACATGTCAGAAAATATTGTTAATATTAAGTCTGATACTGATCCTCAGTTTACACTGGATGGAATGGAGGAGTGTATATCAACCCTCAAATGCAAAACTCCTGGTAAGAGAACTGCCAGCCTTTTAAATCCAGTCAATCAAGGAATGAATGAGAATGAGAATGAAAATGAAGGACAACTGTCAACTAATAGAGGTGGCAGGAAGGGTGTAAAGAGGATCAAGGCAAATATG 1392 0.403 MELVLQDSKAKPNVIKRVHCEWQGHRLQASIPKPLVKKWKDVIMEFQMYTMKNFVVLDNTTYPKVTPDKYILVFSHRTRVHHVEHPSFPLDAFRLKSFKELLTADKLDDSELIDIIGKVVGKEDPRDLVTSKGVETKRLAKILQDLDNNKISCALFGKMVDELLPHLHDGRVEPLIVVLQYFKPNRWNGKTSVQSHFYVSKLHINDGLKEVVGFRNRLLSGVAVSSSRISQVSSQGGWSGADEINQGAVLVKTIEQALNVKEEGPIWICASIVSLNVGKDDWFYKSCRKCPKKVDTPIGNRYECTKCGHTHGCASLRFKVQVLVHDGTGSITLLLWDKETTQLCGKRAEQVMENDVIGDDAYPPTFDNMMDRKVLFKINEIGGSNSLDMSENIVNIKSDTDPQFTLDGMEECISTLKCKTPGKRTASLLNPVNQGMNENENENEGQLSTNRGGRKGVKRIKANM 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1678 464 Gene3D - 1 85 IPR012340 -
Amo03g1678 464 Pfam Domain of unknown function DUF223 23 98 IPR003871 -
Amo03g1678 464 CDD RPA1_DBD_C 251 379 IPR013955 -
Amo03g1678 464 Pfam Replication factor-A C terminal domain 277 379 IPR013955 -
Amo03g1678 464 MobiDBLite consensus disorder prediction 433 464 - -
Amo03g1678 464 Gene3D - 233 395 IPR012340 -
Amo03g1678 464 SUPERFAMILY Nucleic acid-binding proteins 252 379 IPR012340 -
Amo03g1678 464 CDD RPA1_DBD_B_like 114 218 - -
Amo03g1678 464 Gene3D - 87 224 IPR012340 -
Amo03g1678 464 PANTHER REPLICATION FACTOR A 1, RFA1 9 384 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo03g1678 464 PANTHER BNAC07G49340D PROTEIN 9 384 - -
Amo03g1678 464 MobiDBLite consensus disorder prediction 433 450 - -
Amo03g1678 464 SUPERFAMILY Nucleic acid-binding proteins 95 218 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1678 Amo-Chr3 47128901 47131405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1678 21 351 Core DNA Replication Machinery Family AT2G06510 21.229 4.93e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1678 - - adu:107477039 797.349