Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1670 ATGGAGGGTGTCACTGTGGTGAAGCCAGAGGCCGAGGAGGTTACAGGGGATGTGCAGAAAGACCGGGAACTGGTTCTAGAATCTTCTCACCCTGTTGTGGAGGACAGTGTTGATAGAGTTAGCAGCACTGACATGGAGGAACAACAGCTCCAGAACAACAACGTTGGTGATGATAACAAGTCATTGCCAGCTTCTGGACTTAATGCTGTAATTTCTAGCCCAAGCCAACTTACCATCTTCTATAATGGAAGTGTCTGTGTGTATGATGGACTCCCTGCTGACAAGGTGCATGAAATAATGCTTATTGCTGCTGCTACTGCAAAGTCAGCTGAAATGAAGAAGATTAATCCACAGTCTCCTTTTGTTTCAGCTGTTCCCACAAGGCCTTCTTCGCCACATGCAACCTCCAATAATGTTGCTTCTCCTCAGTCAATCTGCTTCCCTGCGGAGAAGAATTCCATCTGCAGGCTGCAAGAGTTCCCAATAGCACGCAGGCATTCACTGCAAAGGTTTCTTGAGAAGCGTCGAGACAGGTTGGGGAGCAAAGCCCCGTATCCTACCTTGTCAACAACAAAAATGGCTGACAACATAGAGAACAACTTCAGTGCCGACAATGCACCGGATTTGGTTAAGCGATCAGAAGAGGAGTTGCAGCCAACTGTAGCTGCCTCTTGA 675 0.477 MEGVTVVKPEAEEVTGDVQKDRELVLESSHPVVEDSVDRVSSTDMEEQQLQNNNVGDDNKSLPASGLNAVISSPSQLTIFYNGSVCVYDGLPADKVHEIMLIAAATAKSAEMKKINPQSPFVSAVPTRPSSPHATSNNVASPQSICFPAEKNSICRLQEFPIARRHSLQRFLEKRRDRLGSKAPYPTLSTTKMADNIENNFSADNAPDLVKRSEEELQPTVAAS* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1670 224 MobiDBLite consensus disorder prediction 121 140 - -
Amo03g1670 224 PANTHER DIVERGENT CCT MOTIF PROTEIN 35 204 - -
Amo03g1670 224 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 35 204 IPR040390 -
Amo03g1670 224 MobiDBLite consensus disorder prediction 184 203 - -
Amo03g1670 224 MobiDBLite consensus disorder prediction 181 224 - -
Amo03g1670 224 Pfam tify domain 73 104 IPR010399 -
Amo03g1670 224 MobiDBLite consensus disorder prediction 27 42 - -
Amo03g1670 224 Pfam Jas motif 161 185 IPR018467 -
Amo03g1670 224 SMART tify_2 70 105 IPR010399 -
Amo03g1670 224 MobiDBLite consensus disorder prediction 43 60 - -
Amo03g1670 224 ProSiteProfiles Tify domain profile. 70 105 IPR010399 -
Amo03g1670 224 MobiDBLite consensus disorder prediction 27 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1670 Amo-Chr3 46638601 46643409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1670 74 187 Tify Gene Family AT5G20900 51.724 4.72e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Amo03g1670 tify 6.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1670 K13464 - gmx:100306045 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2570 11 133169966 133173573 Amo03g1670 03 46638601 46643409 PCT
Amo03g1670 03 46638601 46643409 Amo11g2570 11 133169966 133173573 PCT