Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1652 ATGTCAGATAATAATAATAATAATAATAATAATAACAGAGATGTTGTAATGAGTGTTACCAATGATGAAGATGAGTCAGACACCAAGGTCACTGTGCCTCTTCTGCAAAAGATGGTAGCAGAGGCAGTGGGAACGTTCTTCTTGATATTTGCAGGGTGTGGTTCATTGGTTGTGAACCTCAACAACGACAAGGTGGTGACACTTGCAGGAATCGCAACAGTTTGGGGGRTGCTTGTGATGGTGTTAATATACTCTCTTGGACACATATCTGGTGCTCATTTCAACCCTGCAGTTACCATTGCTCTTGCTTCCATKAACAGGTTCCCTTGGAACCAGGTTCCTGCTTATATCTTCTCTCAAGTTCTTGGATCCACACTTGCAAGTGGTGCTCTCAGACTCTTATTTACGGGCAAGGATAACCAGTTTCCCGGAACCGTTCCATCTGTGACTCACGTTCAAGCTCTCGTTATTGAATTCATAATCACTTTCTTTCTCATGTTCGTCATTTCTGGGGTGGCCACTGATAACCGAGCGATTGGTGAATTGGCTGGACTTGCAGTTGGATCTACTATTCTACTAAATGTGCTCGTTGCAGGGCCATTAACGGGAGCATCAATGAACCCTGCAAGATCATTGGGACCAGCTATTGTGCACAGTGAATACAGAGGAATATGGGTGTATTTGGTGTCACCCATTGTTGGAGCTGTGGCTGGTGCATGGACCTACAATTTCGTTAGGTACACAAAGAAGCCGGTTCGTGAGATCARCAAGAGTGCCTCTTTCTTCAAGGGGAGTAAKTAG 801 0.4419 MSDNNNNNNNNNRDVVMSVTNDEDESDTKVTVPLLQKMVAEAVGTFFLIFAGCGSLVVNLNNDKVVTLAGIATVWGXLVMVLIYSLGHISGAHFNPAVTIALASXNRFPWNQVPAYIFSQVLGSTLASGALRLLFTGKDNQFPGTVPSVTHVQALVIEFIITFFLMFVISGVATDNRAIGELAGLAVGSTILLNVLVAGPLTGASMNPARSLGPAIVHSEYRGIWVYLVSPIVGAVAGAWTYNFVRYTKKPVREIXKSASFFKGSX* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1652 266 CDD MIP 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo03g1652 266 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 7 264 - -
Amo03g1652 266 Pfam Major intrinsic protein 31 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo03g1652 266 TIGRFAM MIP: MIP family channel proteins 40 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo03g1652 266 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo03g1652 266 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo03g1652 266 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo03g1652 266 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo03g1652 266 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo03g1652 266 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo03g1652 266 Gene3D Glycerol uptake facilitator protein. 1 257 IPR023271 -
Amo03g1652 266 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Amo03g1652 266 MobiDBLite consensus disorder prediction 1 22 - -
Amo03g1652 266 MobiDBLite consensus disorder prediction 1 17 - -
Amo03g1652 266 PANTHER AQUAPORIN NIP2-1 7 264 IPR034294 -
Amo03g1652 266 SUPERFAMILY Aquaporin-like 32 255 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1652 Amo-Chr3 45139460 45140842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1652 32 263 Major Intrinsic Protein MIP AT5G37820 62.069 3.99e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1652 K09874 - gmx:100812577 376.711