Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1645 ATGGCAACAAGTTCAAGTTCAAGTTCAAGATCAAGCAACAATGGCAAAGCCATAGGAATTGATCTTGGCACAACCTACAGCTGTGTTGCAGTGTGGCAAAACAACCACGTTGACGTCATTCCAAACGAACAAGGCAACCGCACCACTCCTTCTTGCGTTTCATTCACTGACACTCAAAGATTACTAGGCGATGCCGCCATTAACCAACTCTCCTTGAATCCACTCAACACTGTCTTCGATGCCAAACGCTTGATCGGTCGCAGGTTCAACGACCACTCAGTTCAAGAGGACATGAAGCTGTGGCCTTTTAAGGTTGTCCCTGATCCTAACAACAACAACAAACCACTCATTCTTGTTAACTATAAGTGTGAAGAGAGATACCTTGCACCTGAAGAGGTGTCTTCCATGGTGCTCTTCAAGATGAAGGAGGTTGCTGAAGCTTACTTAGGCCATTCTGTGAAGAATGCAGTCATCACTGTCCCTGCTTACTTCAACAACTCTCAGAGACAAGCCACCAAAGACGCCGGAAAAATCGCGGGCCTTAACGTTATGAGGATCATAAACGAGCCTACTGCTGCTGCCATTGCTTATGGCTTCGACAAGAAGAGTTGGAGGGAAGGTGAGAAGAATGTGCTTGTGTTTGATCTTGGTGGTGGCACTTTCGATGTTTCATTGGTAACAATTGATGAAGGGATGTTCAAGGTGAAGGCCACTTTGGGAGACACACATTTGGGAGGTGAAGATTTTGATAACAAAATGGTGAACCATTGTGTTGAATTGGTGAAAGGAAGGTACAAGAAGGACATTAGTGGGAATGCGAAAGCTTTGAGGAGGTTAAGGTCACATTGTGAGAGGGCCAAGAGGAATCTCTCTTCCATTTCACAAACAAGAATCGAAATCGATGCTTTGCACGAAGGGATTGATCTTTACCTCACTGTTACTAGAGCTGCATTTGAGGAATTGAACAAGGACTTGTTCAAGAAGTGCATGGAGACAGTGGAAAAATGCCTAATTGAGGCTAAGGTTGACAAAAGCCAAGTACACGAGATTGTTCTTGTTGGTGGCTCTACTAGAATTCCGAAAGTTCAGCAACTCTTGAAGGAGATGTTCTGTGTCAATGGTATGGTTAAAGAGCTTTGCAAAAGCATCAATGCCGATGAGGCCGTGGCGTATGGTGCTGCGGTTCAGGCAGCCATATTGAATGGTGAAAGAGACAAGAACGTGGAGGAGCTCTTGTTGCTTGATGTGTTGCCGCTAAGCCTTGGAATTGAAGCTTCCGGTGGAGCCATGTCGGTTTTGATTCCTAAGAATACCATGATTCCCACCAAAAAAGAGAGGGTTTTTTATCCTTCATATGAGGATCAAAGCAGTGTTATGATCAAAGTGTTTGAAGGAGAAGAACCAAAAACAAAAGATAATGTCTTCCTCGGGAAGCTTGAGCTCCAAGCACCAAGAGGAACCTCACAGATCAATGTTTGCTTCGATATAAACATCGATGGCATTCTTGAGGTCACGGCTGAAGACAAAAGTTCGAGGGTGAAGAAAACGATCAAGATCAACCACAGGAATGGAAGGTTGAGGCCAGACGAGTTGAAGAGAATGGTGAGAGATGCAGAGAAGTTTAAGGAAGATGATGAGGAAGTAAAGAAGAAGGAGAAGGCAAAGAACTCGCTTGAAAACTATGCATATGAAATGAAGCAAAAATTGAAGAATCTAGAGAAGAAAATTGAGGAGGCAATAGAATGGTTAGAGAGGAACCAGTTAGCAGAAGCAGAGGAATTTGATTTCAGGAAGCAAGAACTGGAAGATGATCTGAAATCAGATTTTGTATCTAATGTTGTTCCAAACCCTGATGAGTCCAAGGTTCCAATATGGTGTACTTGGAGGGTTCCACCAAGTGGTTGGGTTTGTCTCAACACCGATGGTTCAGTGTTTCAGAACAGAAACAATAACAACAAAGCAGCATGTGGGGGTCTAGTTCGAGATTCCTCGGGTAGTTTCCTAGGTGGTTTTTCTGTTAAGCTAGATCATGCCACGTCAGTTACAATGGCAGAGTTGTGGGGTGTTGTTCATGGACTCAATCTGGCTTGGGATCTTGGGTGTAGAAAAGTGAAGGTGGATATTGATTCTGGAAATGCTCTTGCATTGGTGAGGAATTGTCCTGTGGCTAATGATCCTGCATTTGGGTTGGTTTCTGAGATTAATGCACTTGTGAGAAGGGATTGGTTGGTGGAATTCTCTCATATACTTAGAGAATCTAATCGTGCTGCTGATAAAATGGCTCATTTGGGACACACTTTGGATTCGGGTCTTAGTGTGAAGCGATTCATGGAGGCACCCACTGCTGTTATTGACATTCTTAATGATGATGTTGCTGGTGTTCCTTTACAACGTGGTGTTCATGCCCGTTAG 2412 0.4386 MATSSSSSSRSSNNGKAIGIDLGTTYSCVAVWQNNHVDVIPNEQGNRTTPSCVSFTDTQRLLGDAAINQLSLNPLNTVFDAKRLIGRRFNDHSVQEDMKLWPFKVVPDPNNNNKPLILVNYKCEERYLAPEEVSSMVLFKMKEVAEAYLGHSVKNAVITVPAYFNNSQRQATKDAGKIAGLNVMRIINEPTAAAIAYGFDKKSWREGEKNVLVFDLGGGTFDVSLVTIDEGMFKVKATLGDTHLGGEDFDNKMVNHCVELVKGRYKKDISGNAKALRRLRSHCERAKRNLSSISQTRIEIDALHEGIDLYLTVTRAAFEELNKDLFKKCMETVEKCLIEAKVDKSQVHEIVLVGGSTRIPKVQQLLKEMFCVNGMVKELCKSINADEAVAYGAAVQAAILNGERDKNVEELLLLDVLPLSLGIEASGGAMSVLIPKNTMIPTKKERVFYPSYEDQSSVMIKVFEGEEPKTKDNVFLGKLELQAPRGTSQINVCFDINIDGILEVTAEDKSSRVKKTIKINHRNGRLRPDELKRMVRDAEKFKEDDEEVKKKEKAKNSLENYAYEMKQKLKNLEKKIEEAIEWLERNQLAEAEEFDFRKQELEDDLKSDFVSNVVPNPDESKVPIWCTWRVPPSGWVCLNTDGSVFQNRNNNNKAACGGLVRDSSGSFLGGFSVKLDHATSVTMAELWGVVHGLNLAWDLGCRKVKVDIDSGNALALVRNCPVANDPAFGLVSEINALVRRDWLVEFSHILRESNRAADKMAHLGHTLDSGLSVKRFMEAPTAVIDILNDDVAGVPLQRGVHAR* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1645 803 Pfam Reverse transcriptase-like 639 762 IPR002156 GO:0003676|GO:0004523
Amo03g1645 803 SUPERFAMILY Ribonuclease H-like 634 761 IPR012337 -
Amo03g1645 803 Gene3D - 79 136 - -
Amo03g1645 803 Pfam Hsp70 protein 17 602 IPR013126 GO:0005524|GO:0140662
Amo03g1645 803 PANTHER HEAT SHOCK PROTEIN 70KDA 13 613 IPR013126 GO:0005524|GO:0140662
Amo03g1645 803 CDD RNase_H_like 638 762 IPR044730 -
Amo03g1645 803 ProSitePatterns Heat shock hsp70 proteins family signature 2. 213 226 IPR018181 -
Amo03g1645 803 ProSiteProfiles RNase H type-1 domain profile. 632 766 IPR002156 GO:0003676|GO:0004523
Amo03g1645 803 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 407 559 IPR029047 -
Amo03g1645 803 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 554 603 IPR029048 -
Amo03g1645 803 Coils Coil 551 592 - -
Amo03g1645 803 Gene3D - 18 398 - -
Amo03g1645 803 SUPERFAMILY Actin-like ATPase domain 16 201 IPR043129 -
Amo03g1645 803 Gene3D Actin; Chain A, domain 4 246 328 - -
Amo03g1645 803 Coils Coil 276 296 - -
Amo03g1645 803 ProSitePatterns Heat shock hsp70 proteins family signature 3. 350 364 IPR018181 -
Amo03g1645 803 SUPERFAMILY Actin-like ATPase domain 206 401 IPR043129 -
Amo03g1645 803 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 405 554 IPR029047 -
Amo03g1645 803 ProSitePatterns Heat shock hsp70 proteins family signature 1. 20 27 IPR018181 -
Amo03g1645 803 PRINTS 70kDa heat shock protein signature 219 229 - -
Amo03g1645 803 PRINTS 70kDa heat shock protein signature 44 56 - -
Amo03g1645 803 PRINTS 70kDa heat shock protein signature 383 403 - -
Amo03g1645 803 PRINTS 70kDa heat shock protein signature 16 29 - -
Amo03g1645 803 PRINTS 70kDa heat shock protein signature 487 503 - -
Amo03g1645 803 PRINTS 70kDa heat shock protein signature 66 74 - -
Amo03g1645 803 PRINTS 70kDa heat shock protein signature 410 429 - -
Amo03g1645 803 PRINTS 70kDa heat shock protein signature 156 176 - -
Amo03g1645 803 Gene3D - 555 607 IPR029048 -
Amo03g1645 803 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 13 613 - -
Amo03g1645 803 Gene3D - 202 380 - -
Amo03g1645 803 Gene3D - 635 765 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1645 Amo-Chr3 45104757 45107683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1645 16 602 Calmodulin-binding Proteins AT1G16030 65.785 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1645 K03283 - gmx:100795699 1081.63