Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1637 ATGGCTTTTCCAGGAGCAAATGAATCCATGTCAGGAGCAAGTTCACCACAGAGAAAGATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAGAACACTACAAATCGCCAAGTAACCTTTTGCAAGCGCAGAAATGGTCTTCTCAAGAAAGCTTATGAGTTATCTGTGCTTTGTGATGCTGAGGTTGCTCTTATAGTTTTCTCCAGCCGTGGTCGCCTTTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGATAGGTATAAAAAAGCATGTTCAGATTCATCTGGTGCTAGATCTGCTTTCGAGATTAATGCTCAGTATTACCAGCAAGAAGCAGAAAAACTGCGTGCCCAAATTAGTAACCTGCAGAATAACAACAGGCAAATTCTAGGTGAGTCATTGAGCAGTATGAATGTGAGGGACCTCAAAAACCTGGAGAATAAATTAGAGAAAGGAATCAGCAAGATTCGTTCCAAAAAGAACGAGCTGCTGTTTGCTGAAATTGAATACATGCAAAAGAGGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCTAAGATAGCAGAAAGTGAGAGGAACAACATGAGTGTGTTGCCAACTGCTGGACCCACAAACTATGAATCAATGCATCAATCTCATGAACAACATCAGCATCAGCATCAGCATCAGCAGCAGCAATTTGATTCTCGTGGCTACTTTCAAGTCACTGGTTTACAACCCAATAGTCAGTATGCACGCCAAGACCAAATGTCCCTTCAATTAGTCTAA 777 0.4144 MAFPGANESMSGASSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKACSDSSGARSAFEINAQYYQQEAEKLRAQISNLQNNNRQILGESLSSMNVRDLKNLENKLEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNNMSVLPTAGPTNYESMHQSHEQHQHQHQHQQQQFDSRGYFQVTGLQPNSQYARQDQMSLQLV* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1637 258 Gene3D - 32 98 IPR036879 GO:0003677|GO:0046983
Amo03g1637 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Amo03g1637 258 MobiDBLite consensus disorder prediction 203 230 - -
Amo03g1637 258 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Amo03g1637 258 CDD MADS_MEF2_like 21 95 IPR033896 GO:0000977|GO:0045944
Amo03g1637 258 Pfam K-box region 106 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo03g1637 258 Coils Coil 143 163 - -
Amo03g1637 258 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Amo03g1637 258 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Amo03g1637 258 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Amo03g1637 258 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Amo03g1637 258 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo03g1637 258 PANTHER MADS BOX PROTEIN 14 252 - -
Amo03g1637 258 PANTHER AGAMOUSB 14 252 - -
Amo03g1637 258 MobiDBLite consensus disorder prediction 1 26 - -
Amo03g1637 258 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Amo03g1637 258 Coils Coil 99 133 - -
Amo03g1637 258 SUPERFAMILY SRF-like 21 92 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1637 Amo-Chr3 45035127 45042889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1637 1 258 MADS-box Gene Family AT3G58780 62.921 1.67e-108 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo03g1637 K-box 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1637 K09264 - gmx:732595 392.504