Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1629 ATGGCTCTTGCTTCAAGAAAAATGCCATTACTTCGTACACCTACTTCTTCTTTCACTATCACATCTTCTGTGTTATTCTTTCTGGTGGCGGTGGCGTTTCTTGGTGGTGCTGATGGCGGTGCTTATTTCGCTGGATCAGAGTGTCTCAAAGTGACTCCTTCTGAATTTGTTGTGTCAGTGAGAGATGTGGTTGATGTTATGCAAGGGATTATGTCCATTCTAGCTGAGTTCGACAATGGCGGATTCGGTGATGATTTTCGTGTCTCTAATGCCGTTTCTGACTGTGTCGATTTGCTTGACTTGTCCTCTGATGAGCTTGATTGGTCTGTTTCCGCCACTCAGAACCCCCAAGATTTAAGAACATGGCTAAGTGCAACACTGGCGAATCCAGAAACATGCATGGACGGATTCGAAGGCACTAATAGCATGGTTAAGGGTCTAGTTTCCACTGGCTTAGTCCAAATGATCTCACTGGTTCAGAACCTACTAACCCAAGTGGACCCGGTTCCGGATCACTCCTTCTCCACAAAACAAGGGAAGTTCCCTGCATGGGTGAAACCAAGGGATAGGAAGAAGCTTCTGGAAGCGAACAACAACGGCGTGGGGGTGTTCGCCGACGCGGTGGTGGCCGCCGATGGCACTGGGAATTACACAAAGATAATGGATGCTGTGAAAGATGCACCTAATTATAGTATGAGTCGGTATGTGATATACATAAAGAAGGGTGTTTATAATGAGAATGTTGAGATTAAGAAGAAGAAGTGGAATCTTATGATTATTGGAGATGGGATGAATAACACCGTTATTACCGGTAACCGCAGTTTTGTTGATGGTTGGACCACTTTCCGGTCAGCCACTTTTGCTGTGAATGGTAGAGGATTCATAGCAAGAGACATCGCTTTCCAGAACACAGCAGGGCCGGCGAAGCACCAAGCAGTGGCGCTAAGATCCGACTCGGACCTTAGCGTTTACTACCGATGTGGTATCTTTGGTTACCAAGACAGCCTCTACGCCCACACAATGCGTCAATTTTACAGAGAATGCAAAATCACTGGCACCGTTGACTTCATCTTTGGCGATGCGACTGCGATTTTCCAGAACTGCCAAATCCTCGCTAAAAAAGGCCTACCGGATCAAAAGAACACCATTACGGCGCACGGCCGGAAAGAACCGACCGAGCCAACCGGTTTCTCAATACAATTTTCCAATATAACAGCAGACTCCGACCTTGCGCCGTTGATCAACACTACTCACACGTACCTTGGTAGGCCATGGAAGCCATATTCAAGGACAATTGTGATGCAATCTTTCATTAGTGATGTGCTGAGGCCGGAAGGGTGGCTTGAGTGGAGTGGCAATGTTTCTTTGGACACGTTGTATTATGCCGAGTACATGAATCATGGGCCCGGATCTGGGCTTTCTAACCGCGTGAAATGGCCCGGGTACCATGTCATGAATGATTCTAGCCAGGCTAGTAACTTCACTGTCACACAATTTATTGAGGGAAATCTTTGGTTACCTTCAACGGGTGTGGTGTTCACTGCTGGCTTAGGATTCCTATTCACCCCATTTGATGCTGTTCTTGGTTCAAAAGGATCACTTGAATGCCTTAAAGTTTCTCATGCCGAGTTCACTAACTCAGCGAAAGAAGTTGTTGGTGTCTTGAAAAGTGTTACATCCACTCTGCATTCTGAGTTTGTTAGAAATGGCGGCGGCTTTGTCGATGATCATCGCCTTTCGAGCGCTGTTTCGGCGTGCCTTGAGTTGATGGACTTGTCCTCCGATGAGCTCAGCTGGGTTGTGTCCGTTTCTGAAAGTCCCAAAGGCAAGCATCACGGCACTGGTAATTTGAGCTCTGATTTGAGGACATGGCTAAGTGCTGTTCTTGCCAACACAGACACATGCATGGAAGGATTAGAAGAAGGCACCACCAGCAGTGTCAATAATATAAAGAATGCAGTAACCGCTTCCATCAACAAAGTGAACACAATGGTCCAGGATCTCCTAACACAGGTGCACCCTGTTTCGTATAACAGGGTGAGCAAGAGCAAACTTGAGTTTCCTTCTTGGGCCGAATCAGAGGATCTTGAGGGTAAAAAGTTGCTAACGGCGGTGGATGCCGTGGTGGCTTTGGATGGGAGTGGGGACTACACACGTGTGAAGGATGCTGTGGAATCAGCGCCTGAGTATAGCATGAAACGTTATGTGATACACATTAAGAAGGGTGTGTATTGTGAGAAAGTTGAGATCCATAGCAAGAAGTGGAACCTTGTGATGATTGGAGATGGAATGGAGAATACCGTTATCACTGGTAACTCGAGTCGTTATTTCAATAATACCACCACATACATGACTGCAACCTTTGCTGTGGAAGGCAGAGGGTTTATAGCACAAAACATTTCCTTCCATAACACTGCAGGACCAAGAGGGAGCCAAGCAGTAGCTCTAAGATCACAATCCGATCTCTCAGTCTTCTACCGCTGCGAAATCTCCGGCTACCAAGACAGCCTCTACGCCCACTCCAACCGCCAATTCTACCGAGAGTCCATCATCACCGGCACTGTAGACTTCATCTTCGGCCGCGCCGCCGCAGTCTTCCAGAACTGCACCATACTTGCCAAGAAAGGCTTACCGGAACAAACCAACACCATAACCGCTCAAGGCGCAAACGACTCCACCTCACCCTCCGGCTTCTCCATCCAGTTCAGCAACATCTCTGCACATTCTGAACTTCTACCTTTCTTGAACTGCACAAGAACGTACCTTGGGAGACCATGGAAGGAGTATTCGAGAACGGTTTTCATGCAATCTTACATGAGCGAGATGGTGAGCCCGCAAGGGTGGAAAGAATGGAATGGGACGTTGTATTTGGACACACTTTACTATGGTGAGTTCATGAATTATGGGCCTGGATCTGGGCTTTCTGAGAGAGTGAAATGGCCAGGGTATCATGTTATCAATGACTATGATGAAGCTAGTAACTTCACGGTGGCCCAATTTATTCTGGGGGATCTATGGTTGCCATCAACGGGTGTGAATTATGCATCTGGTTTCACTAAATAG 3063 0.4718 MALASRKMPLLRTPTSSFTITSSVLFFLVAVAFLGGADGGAYFAGSECLKVTPSEFVVSVRDVVDVMQGIMSILAEFDNGGFGDDFRVSNAVSDCVDLLDLSSDELDWSVSATQNPQDLRTWLSATLANPETCMDGFEGTNSMVKGLVSTGLVQMISLVQNLLTQVDPVPDHSFSTKQGKFPAWVKPRDRKKLLEANNNGVGVFADAVVAADGTGNYTKIMDAVKDAPNYSMSRYVIYIKKGVYNENVEIKKKKWNLMIIGDGMNNTVITGNRSFVDGWTTFRSATFAVNGRGFIARDIAFQNTAGPAKHQAVALRSDSDLSVYYRCGIFGYQDSLYAHTMRQFYRECKITGTVDFIFGDATAIFQNCQILAKKGLPDQKNTITAHGRKEPTEPTGFSIQFSNITADSDLAPLINTTHTYLGRPWKPYSRTIVMQSFISDVLRPEGWLEWSGNVSLDTLYYAEYMNHGPGSGLSNRVKWPGYHVMNDSSQASNFTVTQFIEGNLWLPSTGVVFTAGLGFLFTPFDAVLGSKGSLECLKVSHAEFTNSAKEVVGVLKSVTSTLHSEFVRNGGGFVDDHRLSSAVSACLELMDLSSDELSWVVSVSESPKGKHHGTGNLSSDLRTWLSAVLANTDTCMEGLEEGTTSSVNNIKNAVTASINKVNTMVQDLLTQVHPVSYNRVSKSKLEFPSWAESEDLEGKKLLTAVDAVVALDGSGDYTRVKDAVESAPEYSMKRYVIHIKKGVYCEKVEIHSKKWNLVMIGDGMENTVITGNSSRYFNNTTTYMTATFAVEGRGFIAQNISFHNTAGPRGSQAVALRSQSDLSVFYRCEISGYQDSLYAHSNRQFYRESIITGTVDFIFGRAAAVFQNCTILAKKGLPEQTNTITAQGANDSTSPSGFSIQFSNISAHSELLPFLNCTRTYLGRPWKEYSRTVFMQSYMSEMVSPQGWKEWNGTLYLDTLYYGEFMNYGPGSGLSERVKWPGYHVINDYDEASNFTVAQFILGDLWLPSTGVNYASGFTK* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1629 1020 PANTHER PECTINESTERASE 539 1018 - -
Amo03g1629 1020 CDD PMEI-like_4 519 676 - -
Amo03g1629 1020 Pfam Plant invertase/pectin methylesterase inhibitor 90 155 IPR006501 GO:0004857
Amo03g1629 1020 Pfam Plant invertase/pectin methylesterase inhibitor 539 656 IPR006501 GO:0004857
Amo03g1629 1020 Gene3D - 702 1018 IPR012334 -
Amo03g1629 1020 Gene3D - 202 517 IPR012334 -
Amo03g1629 1020 ProSitePatterns Pectinesterase signature 1. 231 250 IPR018040 -
Amo03g1629 1020 CDD PMEI-like_4 19 166 - -
Amo03g1629 1020 PANTHER PECTINESTERASE 176 517 - -
Amo03g1629 1020 PANTHER PECTINESTERASE 50 172 - -
Amo03g1629 1020 SUPERFAMILY Pectin lyase-like 703 1016 IPR011050 -
Amo03g1629 1020 Pfam Pectinesterase 206 503 IPR000070 GO:0030599|GO:0042545
Amo03g1629 1020 Pfam Pectinesterase 706 1004 IPR000070 GO:0030599|GO:0042545
Amo03g1629 1020 ProSitePatterns Pectinesterase signature 2. 851 860 IPR033131 -
Amo03g1629 1020 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 575 666 IPR035513 -
Amo03g1629 1020 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 85 163 IPR035513 -
Amo03g1629 1020 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 168 IPR035513 -
Amo03g1629 1020 Gene3D Invertase/pectin methylesterase inhibitor family protein 536 673 IPR035513 -
Amo03g1629 1020 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 539 1018 - -
Amo03g1629 1020 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 176 517 - -
Amo03g1629 1020 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 50 172 - -
Amo03g1629 1020 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Amo03g1629 1020 SMART PMEI_2 540 671 IPR006501 GO:0004857
Amo03g1629 1020 SMART PMEI_2 13 165 IPR006501 GO:0004857
Amo03g1629 1020 SUPERFAMILY Pectin lyase-like 205 516 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1629 Amo-Chr3 44826536 44842508 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1629 22 517 Carbohydrate Esterase AT3G43270 59.847 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1629 K01051 - gmx:100801813 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2881 13 63359801 63363776 Amo03g1629 03 44826536 44842508 hybridization
Amo01g2672 01 97531865 97534926 Amo03g1629 03 44826536 44842508 PCT
Amo03g1629 03 44826536 44842508 Amo01g2672 01 97531865 97534926 PCT