Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1624 ATGCCATTGTCGTATATGTATAATCAAACACATGAAGTTCAAAGCCCGTGTTGCTTTAGATTCTGTTCAGTATTCACTATCACCAATTATTTAAAGGGATTCAGATACTCTGCTTCCTTCTCATCATTCACGAGTTCGTTCCGTGAACATCATTATTCCATGGCTTCCACCTCTCATAAACTCACCTTCCTCTTTTCTCTCACACTCTTTTTATTCTTCTCCTCATCACATGCTTATGCTGCTGTTAACTCTTCAAATTCCTCAACACTATTTCACACCAACCTTTCTTCCTTAAGATCTTTCTGCAAAACCACCCCTTACCCAGAAACATGCTTCGAATCACTGAAGCTTTCAATCTCAATAAACATAAGTCCAAACATCATTACCTACCTCCTTCACTCCCTACAAGTCGCAATTTCGGAAGCCACAAAGCTATCAACACTTTTCCAAAGCGTTGGTGCCTCAAACTCAAACATCAGAGAGAAACAAAAGGGTTCAATCCAAGACTGCAAGGAGCTTCACCAATCAACTTTAACATCTCTAAAGAGATCACTCTCCGGGGTTCGTAACTCCCAGAACTCAAGAAAATTGCGTGATGCTAGAACCTTCCTCAGTGCAGCACTCACAAACAAGAACACTTGTCTAGAAGGCCTAGACTCTGCTTCCGGAACCATGAAACAAAAACTGGTAAACTCCGTTATTAACACTTACAAGCACGTGAGTAATTCCCTCTCAATGCTTTCTAATCCAGGAAATGACGACAACGATGGCGGATTCATGAAGAAAAGCTTGGAAGATGGGGAGCAGTATGATCCAAACGAGGTGATTGTTGTGGCGAAAGATGGAACAGGGAACTTCAGCACTGTTTCTGATGCAATAAACTTTGCTCCCAATAACAGCTATGTGAGGACGGTAATCTATGTGAAAGAAGGGGTTTATGAGGAAAATGTTGAGATCCCAAGTTGTAAGCCTAACATTGTTCTTGTTGGAGATGGAAGTGACGTCACTCTCATTACTGGTAGCAGAAGTGGTGGTGATGGATGGACCACTTTCAGATCTGCAACTCTAGCTGTATCTGGTGATGGCTTTCTAGCACGTGACATAGCTTTTGAGAACAGTGCAGGTCCTGAGAAGCGTCAAGCAGTTGCACTAAGAGTAAACGCAGATTTAACCGCTTTCTACCGGTGTTCCATTTATGGTTACCAAGACACGCTCTATGTTCACTCCTTCAGACAATTCTACAGAGAATGCGACATTTACGGAACCATAGATTTCATATTCGGTAACGCCGCCGTAGTCCTACAAGAATGTAACATTGTTTCAAGAAAGCCATTGCCTGGCCAATTCACTGTGATAACGGCACAATCAAGAGATACGCCAGACGAGGACACCGGAATCTCGATCCAAAACTGCTCAATTATAGCCACAACTGATTTGTATGCAGCTTCAAACTCTAGCACTACCATTAAGAGCTACCTTGGTAGGCCATGGAGGGTTTATTCAAGAGTTGTTTATCTCGAGTCATACATTGATGACTTCATTGACCCAAAGGGTTGGTCAAAATGGTCTAATAGTGATGATGATCAAGGCTTGGATACTTTGTATTATGGAGAGTTTGAGAATTATGGACCTGGTTCAAGAACAAATGGACGTGTAAATTGGGTTGGCTACCATGTGATGAATTACAATGATGCCTATAACTTCACGGTTTCAGAGTTCATCACTGGTGATGCTTGGCTTGGGTCTACTTCTTTTCCTTATGATGATGGGCCTTATGATCAAGAAGATAAAGGTTTTACATGGCAGTTTTTTCAACAACACCAAGCCCCCGCCTCTTCAACCACTGTATATATAGCCTCCCTCTGCCTTAGACCTGGACTACCAACAATTCCGACAATGGCATTCCAAGATTTCGATATCATAAACGAACGGAGACGACAGGAGAGGAGAAAAAAGATCCAGAAGAGAATCCTCATCGGTCTAGTATCCACCATTCTTCTTGTATGCATCATAGGCGCTGCGGCCTACGTTGGACTCAATTCCAAGTCCTCCGGTGGAGGTGGGAGTGACCACGGCAAGTCACCGTCCAAGCCGAGTCATCAGCCTACCACCACCTCTGCTTCCGCCTCGGCCTCCACCAATACCAAAGCATTGGAAGCTTCATCAAAGATTGTGAAAGTAATATGCGAAGCTGCAGAATATAAGGACAAATGCGAAAGCTCCCTTGGCGATGCTGTTAAGAATGACCCCAATGCACAACCAAAAGATCTGCTTAAATACTCCATCAAACTAGCTCAGGACGAGGTTGGAAAGGCCTTCGACAAAACCACCTCCATGAAATTTGAATCCGAAATGGACAAAGGAGCGTATGAAGATTGCAAGCAGCTTTTTGACGACGCCAAGGAAGAACTCGGCTTCTCCATCTCCGAAATCACCGCTGATGATCTCAAGAAGCTTTCTACAAAAGCCCCTGATCTCAACAACTGGCTGAGTGCAGCTATCTCTTACCACCAAACCTGCATTGATGGCTTCCCCGAAGGGGAATTGAAGACACAACTTAAGGATGTCTTTAAGGATTCTCAAGAATTTGTTAGCAATTCGCTTTCTATTGTAACTGCAGTGTCCACAGTTCTTTCTGCCGTGCAATCAGTTTTGACTCGCCACTTGCTTTCGGAGAAAAACGTCAGCGCTACTCCTTCTTGGGTCAACAGCGAGGATCGGAGGATTCTGAAGGCGGCGGATGACAAACCCACGCCGAACGTAACTGTGGCAAAAGATGGCAGCGGCAACTTCAAAACCGTCTCTGAAGCCTTGGCAGCCATTCCAGAAAAATATGATGGACGCTACGTAGTTTATGTTAAAGAAGGAATATACGAGGAGACAGTGACTGTTACAAAGAAAATGGAAAACATGACCATGTATGGTGATGGATCACAAAAGAGTATCATCACTGGCAGCAAAAATTTTGTAGATGGAGTTAGGACTTTCCAAACTGCAACCTTTGTGGTGCTTGGAAATGGGTTCTTGGGCAAAGCAATGGGATTTAGAAACACTGCTGGGCCGGAGAAGCATCAAGCGGTGGCAGCCAGAGTTCAAGCAGACCGTGCAATGTTCGTTAACTGTCGCTTCGAGGGCTACCAAGACACGCTATACGCCCAAACCCACCGCCAATTCTACCGGAGCTGTGTCATTTCCGGCACCGTCGATTTCATCTTTGGCGACGCAGCCGCCATCTTCCAGAACTGCATCATGACACTTAGAAAACCAATGGACAATCAACAAAACATCGTAACTGCTCAAGGCAGGTACGACCAAAAGGAGACAACTGGCTTCGTTCTGCAAAAGTGTGAGATCAAAGCGGACGACAAGCTAGCTCCGGATAAGGACAAGATCAGGAGCTATCTTGGGAGGCCATGGAAGGAATACTCGAGAACCATTGTAATGGAATCCGATATTGGCGATGTAATTCACCCTGATGGGTGGCTACCTTGGGAAGGCGACTTTGCACTCAAGACACTATTCTATGGTGAGTTCAACAACACAGGACCTGGTGCCAGCACCAATGCCAGGGTCAACTGGGTTGGCCGCAAAGTCCTTAGCAGGGATGAGGCTAGCAAGTTCACTGTAGGAACTTTCTTGGATGGAGCATGGTTTAGTGGTAGAGGCGTACCAACTCAATATGGCTTGTACAATTGA 3696 0.4494 MPLSYMYNQTHEVQSPCCFRFCSVFTITNYLKGFRYSASFSSFTSSFREHHYSMASTSHKLTFLFSLTLFLFFSSSHAYAAVNSSNSSTLFHTNLSSLRSFCKTTPYPETCFESLKLSISINISPNIITYLLHSLQVAISEATKLSTLFQSVGASNSNIREKQKGSIQDCKELHQSTLTSLKRSLSGVRNSQNSRKLRDARTFLSAALTNKNTCLEGLDSASGTMKQKLVNSVINTYKHVSNSLSMLSNPGNDDNDGGFMKKSLEDGEQYDPNEVIVVAKDGTGNFSTVSDAINFAPNNSYVRTVIYVKEGVYEENVEIPSCKPNIVLVGDGSDVTLITGSRSGGDGWTTFRSATLAVSGDGFLARDIAFENSAGPEKRQAVALRVNADLTAFYRCSIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVLQECNIVSRKPLPGQFTVITAQSRDTPDEDTGISIQNCSIIATTDLYAASNSSTTIKSYLGRPWRVYSRVVYLESYIDDFIDPKGWSKWSNSDDDQGLDTLYYGEFENYGPGSRTNGRVNWVGYHVMNYNDAYNFTVSEFITGDAWLGSTSFPYDDGPYDQEDKGFTWQFFQQHQAPASSTTVYIASLCLRPGLPTIPTMAFQDFDIINERRRQERRKKIQKRILIGLVSTILLVCIIGAAAYVGLNSKSSGGGGSDHGKSPSKPSHQPTTTSASASASTNTKALEASSKIVKVICEAAEYKDKCESSLGDAVKNDPNAQPKDLLKYSIKLAQDEVGKAFDKTTSMKFESEMDKGAYEDCKQLFDDAKEELGFSISEITADDLKKLSTKAPDLNNWLSAAISYHQTCIDGFPEGELKTQLKDVFKDSQEFVSNSLSIVTAVSTVLSAVQSVLTRHLLSEKNVSATPSWVNSEDRRILKAADDKPTPNVTVAKDGSGNFKTVSEALAAIPEKYDGRYVVYVKEGIYEETVTVTKKMENMTMYGDGSQKSIITGSKNFVDGVRTFQTATFVVLGNGFLGKAMGFRNTAGPEKHQAVAARVQADRAMFVNCRFEGYQDTLYAQTHRQFYRSCVISGTVDFIFGDAAAIFQNCIMTLRKPMDNQQNIVTAQGRYDQKETTGFVLQKCEIKADDKLAPDKDKIRSYLGRPWKEYSRTIVMESDIGDVIHPDGWLPWEGDFALKTLFYGEFNNTGPGASTNARVNWVGRKVLSRDEASKFTVGTFLDGAWFSGRGVPTQYGLYN* 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1624 1231 ProSitePatterns Pectinesterase signature 2. 419 428 IPR033131 -
Amo03g1624 1231 Gene3D Invertase/pectin methylesterase inhibitor family protein 94 249 IPR035513 -
Amo03g1624 1231 Gene3D Invertase/pectin methylesterase inhibitor family protein 721 875 IPR035513 -
Amo03g1624 1231 ProSitePatterns Pectinesterase signature 2. 1064 1073 IPR033131 -
Amo03g1624 1231 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 84 586 - -
Amo03g1624 1231 TIGRFAM PME_inhib: pectinesterase inhibitor domain 706 872 IPR006501 GO:0004857
Amo03g1624 1231 TIGRFAM PME_inhib: pectinesterase inhibitor domain 64 247 IPR006501 GO:0004857
Amo03g1624 1231 MobiDBLite consensus disorder prediction 684 712 - -
Amo03g1624 1231 CDD PMEI-like_3 728 876 - -
Amo03g1624 1231 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 98 249 IPR035513 -
Amo03g1624 1231 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 723 873 IPR035513 -
Amo03g1624 1231 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 647 1229 - -
Amo03g1624 1231 Pfam Pectinesterase 920 1215 IPR000070 GO:0030599|GO:0042545
Amo03g1624 1231 Pfam Pectinesterase 276 577 IPR000070 GO:0030599|GO:0042545
Amo03g1624 1231 PANTHER PECTINESTERASE 647 1229 - -
Amo03g1624 1231 SUPERFAMILY Pectin lyase-like 918 1219 IPR011050 -
Amo03g1624 1231 PANTHER PECTINESTERASE 84 586 - -
Amo03g1624 1231 Pfam Plant invertase/pectin methylesterase inhibitor 97 246 IPR006501 GO:0004857
Amo03g1624 1231 Pfam Plant invertase/pectin methylesterase inhibitor 724 870 IPR006501 GO:0004857
Amo03g1624 1231 Gene3D - 914 1229 IPR012334 -
Amo03g1624 1231 Gene3D - 271 591 IPR012334 -
Amo03g1624 1231 SMART PMEI_2 93 246 IPR006501 GO:0004857
Amo03g1624 1231 SMART PMEI_2 720 870 IPR006501 GO:0004857
Amo03g1624 1231 CDD PMEI-like_3 100 250 - -
Amo03g1624 1231 SUPERFAMILY Pectin lyase-like 273 587 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1624 Amo-Chr3 44746944 44754797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1624 96 590 Carbohydrate Esterase AT2G26440 65.703 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1624 - - aip:107630581 1154.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2673 01 97538760 97540647 Amo03g1624 03 44746944 44754797 PCT
Amo03g1624 03 44746944 44754797 Amo01g2673 01 97538760 97540647 PCT