Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1618 ATGACGAGAACACAAGAATTAGTGATGATGATAACCTTTTTAGTGTTGGGATGTGCACTAACCATGGCAGAAACAGCAGCTCTAGAGCATGCTCATCACTATGAATGCACTCATACCAGATACCCTAGTCTATGTGATGAAACCTTGAAGGAGTTGATGAGTTCAGGGAATGATAAAAATGTTGATATCATTCTGGCTCTTGTAAACAAAACCATATCTGAAACCAACTTGCCAAGATCATATTTTGCTTCATTTGAGACTCAGGATAATGCTCAACAAGACAAATCATCTTCATCAGTCGGAGGTTATTGTCAAGAGCTAATGGACATGTCAATGAAGAGGTTGGACCAATCCATGGAAGCACTGAGCAAGCCAACAAGAAACAAGGAGGACATCCAAACGTGGCTAAGCGCTTCCCTAACTTTCCAACAAACTTGCAACGACTTCGCACGATCACAAACCTCCACCGGCGTCGCCACTGCCGTGGTAGACACCATTTCCAAGAAGATGGACTATCTTTCCGCATTAGCCAGTAACTCACTTGCCCTGGTTAACCAAATCACCGCCACCACAACCACAACCACTACCACGAAGCGAAAAGAAAAGGAAAGCAAAGAGGAATTTCCCGAATGGATTTCTTCGAAAGCAAGAAAACTCCTTCAGGGAGCAGCGCCCATAGAAGCGAACGCGGTGGTTGCGCAAGACGGTTCAGGGAACTACAAGACGATTTCTGAGGCCATTGCAGCGGCCACAGCAATCATGGGGGATGGATTCATAGCAAAAGACATAGGTTTCCACAACAACGCAGGCCCACAAGGCGAACAAGCCGTGGCTCTCTACATAGCTTCAGATCGCTCCGTTCTCTTCCGATGCAGCATTGCAGGCTACCAAGACACCATCTACGCCCACTCCCTCCGACAATTCTACAGAGAATGCGACATCTACGGCACCATCGACTTCATCTTCGGAAACGCCGCTGCCGTCTTCCAAACCTGCAACATCATGCTCCGCCGCCCTCTCCACGGCGGCTCCAACGCCGTTCTCGCCAACGGAAGAACTGATCCTGGACAGAACACAGGCTTCTCGCTTCACAAGTGTGCCATAACACCAAGCTCGGATTTGTCTCCTGTGAAGCACTCTGTTAAGTCTTATCTTGGGAGGCCCTGGAAGGAGTATTCTAGGGCCGTCGTGATAGGATGTACCATAGACGACGCCATTGCGCAGCAGGGTTGGGTTGAGTGGCCTGGTTATGGAAGCTCGGTCTTGAGGACACTGTATTTTGGTGAGTATGGTAATTCAGGACCTGGTGCTGGAACTGCAAGAAGGGTTCAGTGGCCTGGTTTTCATGTCATGGGTAATGTTGAGGCTTCTAAGTTCACTGTTGGTAACTTTATTGCTGGAAGTTCATGGATTCCTTCCTCCGTCGGTTTCATCTCGGGTCTCTAA 1446 0.4848 MTRTQELVMMITFLVLGCALTMAETAALEHAHHYECTHTRYPSLCDETLKELMSSGNDKNVDIILALVNKTISETNLPRSYFASFETQDNAQQDKSSSSVGGYCQELMDMSMKRLDQSMEALSKPTRNKEDIQTWLSASLTFQQTCNDFARSQTSTGVATAVVDTISKKMDYLSALASNSLALVNQITATTTTTTTTKRKEKESKEEFPEWISSKARKLLQGAAPIEANAVVAQDGSGNYKTISEAIAAATAIMGDGFIAKDIGFHNNAGPQGEQAVALYIASDRSVLFRCSIAGYQDTIYAHSLRQFYRECDIYGTIDFIFGNAAAVFQTCNIMLRRPLHGGSNAVLANGRTDPGQNTGFSLHKCAITPSSDLSPVKHSVKSYLGRPWKEYSRAVVIGCTIDDAIAQQGWVEWPGYGSSVLRTLYFGEYGNSGPGAGTARRVQWPGFHVMGNVEASKFTVGNFIAGSSWIPSSVGFISGL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1618 481 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED 249 480 - -
Amo03g1618 481 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 187 IPR035513 -
Amo03g1618 481 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 187 IPR006501 GO:0004857
Amo03g1618 481 Pfam Plant invertase/pectin methylesterase inhibitor 36 183 IPR006501 GO:0004857
Amo03g1618 481 ProSitePatterns Pectinesterase signature 2. 314 323 IPR033131 -
Amo03g1618 481 PANTHER PECTINESTERASE 9 251 - -
Amo03g1618 481 PANTHER PECTINESTERASE 249 480 - -
Amo03g1618 481 SUPERFAMILY Pectin lyase-like 226 473 IPR011050 -
Amo03g1618 481 SMART PMEI_2 27 183 IPR006501 GO:0004857
Amo03g1618 481 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Amo03g1618 481 CDD PMEI-like_3 36 187 - -
Amo03g1618 481 Pfam Pectinesterase 249 467 IPR000070 GO:0030599|GO:0042545
Amo03g1618 481 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 189 IPR035513 -
Amo03g1618 481 Gene3D - 249 481 IPR012334 -
Amo03g1618 481 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED 9 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1618 Amo-Chr3 44294829 44299502 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1618 10 481 Carbohydrate Esterase AT2G45220 38.230 1.36e-103 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1618 K01051 - qsu:112019761 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2877 13 63223286 63228219 Amo03g1618 03 44294829 44299502 hybridization