Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1596 ATGAGCCTCCAGTCCCCTCTGAATCCCCAAACAGGATCAAACAGAAGGAGAAGGACTGCACCGATTCCCCCTTCCAACGATGTAATCGACGTTGACAATTTCGTCTTCACCCCAGTCACTCACAAGGGCACAGACAAGACCACACCCATCTCCGTCGAACACTACGCCCTAGACAGGGACCTCCAGCTCGCAATCGCCGCCTCCCTCGCTGTCCCGCTACCTCATCTCATCAACCTATCCTCCGACGACGACGACGACGTCAGCATCCTCGCTGCAAAACCCGAAAATACCCCTTTCGGGAAACGAAGAAAGAGGGACAACAATGAGAACGAGAAAGGCGAGTCCTCCAACAGCGCCCCACCATTCATCTGCGAAATCTGCACCGAAACAAAGTCATTAGTGGAGTCTTTCTGCGTCACCGGTTGCCACCACTCTTACTGCAACGACTGTGTGATACTGTATGTTGGGTCGAAGCTTCAGGAGAATGTGATTAACATTCGGTGTCCGGTGCCAGGATGCAAGGGGCTTTTAGAGCTGGAAGATTGTCGTGAGATTCTCCCGAAGGAGGTTTTCGATCGATGGGGGATGGCCATGTGTGAGGCTGTGGTTGTCGAGGGTGAGAGATTCTATTGCCCTTTCAAGGACTGCTCAGCGCTTATGATCAACGACGGCGGAGAGTTGGTGAGGCAATCAGAGTGCCCTAACTGTCGGAGGCTGTTCTGTGCCCAGTGCAAGGTTGCTTGGCATGATGGGATTGGCTGCGACGAGTTTCAGACCCTGAATAAGGATGAGAGGGAGAAGGAGGATATTATGCTGATGAATCTGGCTAAAACCAAGAAGTGGAGGAGGTGCCCCATGTGCAAGTATTATGTTGAGAAATCTGAGGGCTGCATGTACATGAAATGCAGATGTGGATATGCCTTCTGTTACAGCTGTGGAGCCCTTTCCAACAAAAATACCCACTATTGCAGCAGCTGCAAGCGTTAA 987 0.5167 MSLQSPLNPQTGSNRRRRTAPIPPSNDVIDVDNFVFTPVTHKGTDKTTPISVEHYALDRDLQLAIAASLAVPLPHLINLSSDDDDDVSILAAKPENTPFGKRRKRDNNENEKGESSNSAPPFICEICTETKSLVESFCVTGCHHSYCNDCVILYVGSKLQENVINIRCPVPGCKGLLELEDCREILPKEVFDRWGMAMCEAVVVEGERFYCPFKDCSALMINDGGELVRQSECPNCRRLFCAQCKVAWHDGIGCDEFQTLNKDEREKEDIMLMNLAKTKKWRRCPMCKYYVEKSEGCMYMKCRCGYAFCYSCGALSNKNTHYCSSCKR* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1596 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 205 IPR013083 -
Amo03g1596 328 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 327 - -
Amo03g1596 328 MobiDBLite consensus disorder prediction 1 20 - -
Amo03g1596 328 SMART ibrneu5 264 326 IPR002867 -
Amo03g1596 328 SMART ibrneu5 192 254 IPR002867 -
Amo03g1596 328 SUPERFAMILY RING/U-box 120 201 - -
Amo03g1596 328 MobiDBLite consensus disorder prediction 97 112 - -
Amo03g1596 328 SUPERFAMILY RING/U-box 265 327 - -
Amo03g1596 328 SMART ring_2 284 326 IPR001841 -
Amo03g1596 328 SMART ring_2 124 171 IPR001841 -
Amo03g1596 328 SUPERFAMILY RING/U-box 197 258 - -
Amo03g1596 328 Pfam IBR domain, a half RING-finger domain 275 319 IPR002867 -
Amo03g1596 328 Pfam IBR domain, a half RING-finger domain 205 254 IPR002867 -
Amo03g1596 328 MobiDBLite consensus disorder prediction 91 118 - -
Amo03g1596 328 MobiDBLite consensus disorder prediction 1 27 - -
Amo03g1596 328 ProSiteProfiles TRIAD supradomain profile. 120 328 IPR044066 -
Amo03g1596 328 Gene3D - 252 328 - -
Amo03g1596 328 ProSiteProfiles Zinc finger RING-type profile. 124 170 IPR001841 -
Amo03g1596 328 ProSitePatterns Zinc finger RING-type signature. 142 151 IPR017907 -
Amo03g1596 328 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 327 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1596 Amo-Chr3 43723912 43725622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1596 124 314 C3H Transcription Factor Family AT2G19610 31.841 6.83e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1596 K11975 - twl:120005643 396.741