Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1595 ATGATGTTCCATTCTCAGGGTTCTTCAAGGCATTCTAGTCTTCTTGCTGTCCTGAATGGTGGTAAATCATGTGAGGATAAGCAAAAAGAGAAGCAAGAGGAAGCTTCTGCTTCGGAGAATCAATCACAATACCCCTTTCCGGAGCTTTCTTCCTCTGGTCGTCTTGAGGTGACGGTATTAACTAAACCTACTGTGGATGAACTCGGTCGAGTAATTGAGCAACTGCAGCCAGATTTTGTTTACCTACAAGGTAGACAGCTAGAAGAAAGTGGAGAAATTGGATCTCTTATATGGGAAGATTTTGACCTGTCTAGTCCAGAAGCATTATGTGCATTGTTTTGTTCAAAATTACCTAATACTGTTTATTTGGAAACTCCTAAGGGAGAAAACTTGGCAGAGGCACTCCACTCTAAGGGAATTCCTTACACCATATATTGGGAAAATGACTTTTCAAAGTATGCAGCTTCTCATTTTCATCAAGCTTTGTTCTCAGTGGCACAGAGTACATCGAGTCACACATGGGATGCTTTCCAGCTTGCTCTTGCAACTTTCAGACTATACTGTGTACGAAACAATGTCTTTCCTCCTAACAATAATAAAGGTGGTGGCAAGCTTGGGCCACAAATTCTTGGTGACCCTCCCAATATTGATGTTGGTACAAGTGAACATGACATAGAACAGGAGGAGACTGAACCTGAGAGCATTTCTGCTATAACAATATATGATACTGATGTGAACATGAGATTTCTTGTTTGTGGAGTTAATTGCACTTCGGATGCTTTTTTATTGGGGTCATTAGAGGATGGACTTAATGCTCTCCTATGCACAGAAATACGTGGATGTAAACTTTACAACCGAACAAGTGCTCCACTACCACCTCTCCAAGCAGCAACATTCTCACGTGGTTTGGTGACCATGCGTTGTGATATATCCACTTGTAGTTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGACACTTGTTTTAATGATCAGGCAAGGCTTTTGGAGAATCATATTAAAAAAGAGCTCATTGAGAAGAGTCAACTTGTTCAAGCAGTTCCTAATCACGTACGAAGCAAATTGTCTTACTCTGAGCCTCGAAGATCATCCTCAGTAGCCTGTGGATCAAGCGTCTTTGAAGTTTGCATGCGTGTTCCTGCATGGGCTTCACAGATTCTGAGACAGCTGGCTCCTAATGTATCATACCGTAGCCTAGTGATTTTGGGAGTTGCTAGTATTCAAGGATTGCCAGTTGCATCATTTCATAAAGATGATGCTGAACGTCTCCTTTTCTTTTGTACTAGGAAGGGGAAAGAAAACTCTAGTAATGATCCTGTTTTCTCTGGGTATCCTACATGGCTGATGCCTCCAGCACCTAGTCGAAAAAGATTTGAACCATGCTCTAGGAAAAAGTCAGAGGATTTTCGTAGTGATAGACATAAATTAGATTTTGCTGCAATGAGACCAATTCCTCATTCTAATTATCATAAGATTCTTCCCTTTTCGGGATTATCTGAGGGTGAAAGGCATGGGGAACATGGAAAGTCAAATCAGTTACTTGCTCCTATTAGGCATAATGTTGTAGGCATAAATTCTGTACCAAAGAGGAAATCTGCATCAAACACATTTCAAGCTCTTCAGGTTATTTCTTTAAATCCGCTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCGATACGAGTTTGCTCAGAGGAGGAATTCTTGAGGGATGTGATGCAGTTTCTAATCCATCGAGGGCATAATCGCCTAGTCCCACCGGGTGGGATAGCGGAGTTTCCTGATGCCATTCTCAATGCAAAACGCCTTGATCTTTTCAACCTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGGAATGGTATCAACTGGAAAGGGCAAGTTTTCTCAAAGATGCGCAATCACACTCTGACAAATAGAATGACGGGTGTTGGCAATACATTGAAGAGACATTATGAGACTTATCTTTTAGAATATGAATTAGCTCACGATGACGTAGATGGGGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGTATATGTGGTGAGTGGGCTCACTTTGGATGTGATAGGCGGCAGGGACTTGGGGCATTTAAGGACTATGCTAAAACTGATGGGCTGGAATACGTTTGTCCTCACTGCAGCATTTCAACTTATAGAAAAAAATCTCAAAAAACTCTCTCATTTGACTAG 2244 0.4193 MMFHSQGSSRHSSLLAVLNGGKSCEDKQKEKQEEASASENQSQYPFPELSSSGRLEVTVLTKPTVDELGRVIEQLQPDFVYLQGRQLEESGEIGSLIWEDFDLSSPEALCALFCSKLPNTVYLETPKGENLAEALHSKGIPYTIYWENDFSKYAASHFHQALFSVAQSTSSHTWDAFQLALATFRLYCVRNNVFPPNNNKGGGKLGPQILGDPPNIDVGTSEHDIEQEETEPESISAITIYDTDVNMRFLVCGVNCTSDAFLLGSLEDGLNALLCTEIRGCKLYNRTSAPLPPLQAATFSRGLVTMRCDISTCSSAHISLLVSGSADTCFNDQARLLENHIKKELIEKSQLVQAVPNHVRSKLSYSEPRRSSSVACGSSVFEVCMRVPAWASQILRQLAPNVSYRSLVILGVASIQGLPVASFHKDDAERLLFFCTRKGKENSSNDPVFSGYPTWLMPPAPSRKRFEPCSRKKSEDFRSDRHKLDFAAMRPIPHSNYHKILPFSGLSEGERHGEHGKSNQLLAPIRHNVVGINSVPKRKSASNTFQALQVISLNPLPMKKHGCDRAPIRVCSEEEFLRDVMQFLIHRGHNRLVPPGGIAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISTYRKKSQKTLSFD* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1595 747 SMART ARID_2 567 670 - -
Amo03g1595 747 CDD PHD_ARID4_like 680 731 - -
Amo03g1595 747 CDD ARID 572 670 - -
Amo03g1595 747 SUPERFAMILY FYVE/PHD zinc finger 666 734 IPR011011 -
Amo03g1595 747 MobiDBLite consensus disorder prediction 22 49 - -
Amo03g1595 747 Pfam ARID/BRIGHT DNA binding domain 573 670 IPR001606 GO:0003677
Amo03g1595 747 Gene3D - 568 670 IPR036431 GO:0003677
Amo03g1595 747 ProSiteProfiles ARID domain profile. 570 674 IPR001606 GO:0003677
Amo03g1595 747 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 743 - -
Amo03g1595 747 SUPERFAMILY ARID-like 571 685 IPR036431 GO:0003677
Amo03g1595 747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 671 741 IPR013083 -
Amo03g1595 747 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 743 IPR042293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1595 Amo-Chr3 43715185 43723384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1595 2 743 ARID Transcription Factor Family AT3G43240 64.257 0.0 958
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Amo03g1595 ARID 6.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1595 - - gmx:100808357 1198.34