Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1593 ATGGAAGATGAAAAAGCCTGCATCACAAGTCTAACTCTGGGTTTGGGAATTGGAGGAGGAGGAGGAGGGTATCCCCCAAAGAAGAAGCAGAAAATGATGATGATAATGAAGAACAAGCCTATTAAGCCTGTGCCTTCGCTGGACCTAACTTTTGATGATGATGAAGCTTTTCCGAAAGAAGCCATTGATGATGATGATGATGATGATGATGATGATGATCGAGAAGAAGGATTATTCATCTCTTTGAATAATAAGAGAGTCGGTGAAGAACACAGCTACAATTATAATAAGCGCTGCCCGGCGAATGGAAAAAACAGAGATGACAGCTATAATGATGAGAATAATAATAATCATAATAATAATAATTATTGCAGCAGAAAGAAACTGAGACTCACCAAGGAMCAATCAGCTTTGCTTGAAGAAAATTTCAAGAATCATACCACTCTTAACCAAGCTCAGAAACAYGCACTTGCTAAGCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAATAGAAGAGCAAGGACAAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCTTGAAGAAATGCTGTGAGAGATTAACAGATGAGAATCTAAGGTTGAAGAAGGAATTGCAGGAGCTACGTGCAATCAAAGCTGGACCAACACAATCACCAACACCGCCATTGTACATTCAATTACTCTCTTCTAAATCTTCYCCCTTGACTATTTGTTCTTCTTGTGAGGAGCTATTGAAGAAGACCAAACAAGAAAATATATAA 774 0.3837 MEDEKACITSLTLGLGIGGGGGGYPPKKKQKMMMIMKNKPIKPVPSLDLTFDDDEAFPKEAIDDDDDDDDDDDREEGLFISLNNKRVGEEHSYNYNKRCPANGKNRDDSYNDENNNNHNNNNYCSRKKLRLTKXQSALLEENFKNHTTLNQAQKHALAKQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLTDENLRLKKELQELRAIKAGPTQSPTPPLYIQLLSSKSSPLTICSSCEELLKKTKQENI* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1593 257 SUPERFAMILY Homeodomain-like 114 183 IPR009057 -
Amo03g1593 257 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Amo03g1593 257 MobiDBLite consensus disorder prediction 57 76 - -
Amo03g1593 257 CDD homeodomain 126 183 IPR001356 GO:0003677
Amo03g1593 257 Pfam Homeobox associated leucine zipper 182 215 IPR003106 GO:0006355|GO:0043565
Amo03g1593 257 Coils Coil 181 215 - -
Amo03g1593 257 MobiDBLite consensus disorder prediction 37 123 - -
Amo03g1593 257 PANTHER - 10 252 - -
Amo03g1593 257 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Amo03g1593 257 Gene3D - 118 187 - -
Amo03g1593 257 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Amo03g1593 257 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Amo03g1593 257 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 10 252 - -
Amo03g1593 257 SMART HOX_1 124 186 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1593 Amo-Chr3 43614673 43616624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1593 125 248 Homeobox Transcription Factor Family AT4G37790 67.742 1.40e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo03g1593 Homeodomain 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1593 K09338 - gmx:100790522 200.29