Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1509 ATGGTGACCAGCAGGGATCATAGGACTGGCCTCGAGGCAATGGGTTTCGAAGAACAGGATTCATGGGTTATGCTTGTTTTGGGTGCATTTACAGGAAGGTGTGACAGACACGAGATTGAAGCTGAAGAAACTATAGCTAAATGTCAAGGCAAGGAAGATCCGATTTTTCATGAATTCAACGGGGTGGAAGGTCTTCAAGTAGAAGATATTCTTAAAATGGAGTTTTGTACTCCTGAAGAAGCACGGTGTTTTTATAACAGCTATAGCCGATTGAAGGGATTTGCCATGAGGCAGGGGAAAAAGGTACCGAACAAGGCAGGAGAGATCGTTAGGTATACGTTCGTGTGCAACAGGCAAGGGTTTCATGAAAAGAAATAG 378 0.4392 MVTSRDHRTGLEAMGFEEQDSWVMLVLGAFTGRCDRHEIEAEETIAKCQGKEDPIFHEFNGVEGLQVEDILKMEFCTPEEARCFYNSYSRLKGFAMRQGKKVPNKAGEIVRYTFVCNRQGFHEKK* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1509 125 Pfam FAR1 DNA-binding domain 84 125 IPR004330 -
Amo03g1509 125 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 56 125 - -
Amo03g1509 125 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 56 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1509 Amo-Chr3 39875601 39876332 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo03g1509 FAR1 1.9e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1509 - K17604 adu:110278586 192.2