Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1501 ATGGGGATGAAGAAGAGCGAAAAAGGCAGCAAGAAAGTGATGGAAAATAAGAATGAGAAGAAAGATGTTGGCAGTGCTGCCAGCAATGCAACCATAGGAAATGACAGCGTTTTTGCTTCTTGCTCCTTCTCTAGCCTTGGCCTTTACCCTTCCTTATGCGATGAACTGCGTGAAAAATTAGGATTCGAGGTTCCAACTCTGGTGCAAGCTCAAGCCATTCCTGTTATTCTCGCTGGCCGTCATGCACTTATTAATGCTGCCACAGGCACAGGGAAGACAGTTGCCTACTTAGCTCCACTTATTCATCACTTGCAGAATTATGATACTCGCATACAACGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGTGAGCTATGTCTGCAGGTTTATGAAATTCTTCAAAAGCTATTGCATCGATTCCATTGGATTGTTCCTGGGTATGTTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCTAGGCTACGCAAAGGCATATCAATTCTTATAGCAACACCTGGGCGCCTTTTAGATCATTTGAAGAATACATCATCATTCTTGTACACAAAATTGCGCTGGATAATTTTTGATGAAGCTGATAGGATTTTGGAATTAGGATTTGGACAAGATATACAGGAAATACTAGATCTTTTGGGTTCAAGGAAAGCAGCAAATGATTACAAGGAGAGTACAGTTCCAAGAAACTCTGAATTTCAAAGGCAGAATTTGCTTTTTTCTGCCACCTTAAATGAGAAAGTGAACCATCTTGCTAAAATAAGTTTACACAATCCAGTGATGATTGGTCTTGAGGGTAAAACAAGAAAACCAGTATCAACAATTGAAAGCATTGATTCTTCAGAGTCTGATGAAGATGATGAAGTCAAGTATTCCAGTAAAATGCCAACAGCTGTAGATTATAAAATCCCCAGACAGTTAATTCAGAGATATGTGAAAGTGCCTTGTGGTTCTCGGCTTGCTGTTCTTCTTTCAATTCTAAAGCATCTTTTTGAAAGAGACACTTCACAAAAGGTTGTGGTATTCTTTTCGACATGTGATGCGGTAGACTTTCACCATTCGCTACTAAGTGAGTTCCACTTCTCGACTGATCCTCAAACAAAAGAAAGGGTCATACAGATGTTTCTTGGATGCCAAACTTTTCGATTGCATGGTAATATGGAACATGAAGACCGGAGATCTACTTTTCAGGCTTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTAGAGGCCTGGATTTTCCAAAGGTTCGATGCATCATACAGTATGATTCTCCTGGGGAAGCTACTGAATATGTACACAGAGTTGGTAGAACTGCTCGTCTGGGTGAAAGGGGAGAGTCCTTATTATTTCTGCAACCAGTTGAAATAGATTATTTACAGGACTTGGAGAAACATGGTGTTTCACTAGCAGAGTATCCTCTTCTCAAAGTGTTGGATAATTTTACATTACACGGACAGAACAAACACGTAAAGAAGTCTGTTTTCATCGACTTGCATCCTTGGGTCCTTTGTCTCCAGAAGGCACTTGAATCATTCATCATTTCCAAGCCCAAGATGGATGAACTTGCTAGGAAGGGATTTTGCTCTTGGGTCCGTGCTTACACAGCACATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCATGTGGCCAAAAGCTTTGCGTTGAAACAACAACCGTCCTTAGTTGGACAATCCTTCCAAAAGCAAAATAAGAAGAGAAAGAGATTTGAGAAGAAAATTGGGCTATCGAAAAAGAGAAAAGTTGCTAGAGTGACTTAA 1836 0.4041 MGMKKSEKGSKKVMENKNEKKDVGSAASNATIGNDSVFASCSFSSLGLYPSLCDELREKLGFEVPTLVQAQAIPVILAGRHALINAATGTGKTVAYLAPLIHHLQNYDTRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTKLRWIIFDEADRILELGFGQDIQEILDLLGSRKAANDYKESTVPRNSEFQRQNLLFSATLNEKVNHLAKISLHNPVMIGLEGKTRKPVSTIESIDSSESDEDDEVKYSSKMPTAVDYKIPRQLIQRYVKVPCGSRLAVLLSILKHLFERDTSQKVVVFFSTCDAVDFHHSLLSEFHFSTDPQTKERVIQMFLGCQTFRLHGNMEHEDRRSTFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLAEYPLLKVLDNFTLHGQNKHVKKSVFIDLHPWVLCLQKALESFIISKPKMDELARKGFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQNKKRKRFEKKIGLSKKRKVARVT* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1501 611 SMART ultradead3 61 285 IPR014001 -
Amo03g1501 611 Pfam DEAD/DEAH box helicase 67 257 IPR011545 GO:0003676|GO:0005524
Amo03g1501 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 502 IPR001650 -
Amo03g1501 611 Pfam Helicase conserved C-terminal domain 332 455 IPR001650 -
Amo03g1501 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 269 IPR014001 -
Amo03g1501 611 PANTHER RNA HELICASE 24 608 - -
Amo03g1501 611 CDD DEADc_DDX31 52 270 - -
Amo03g1501 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 41 70 IPR014014 GO:0003724
Amo03g1501 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 269 IPR027417 -
Amo03g1501 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 487 IPR027417 -
Amo03g1501 611 CDD SF2_C_DEAD 314 464 - -
Amo03g1501 611 Gene3D - 324 608 IPR027417 -
Amo03g1501 611 Pfam Domain of unknown function (DUF4217) 519 579 IPR025313 -
Amo03g1501 611 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 24 608 - -
Amo03g1501 611 Gene3D - 3 272 IPR027417 -
Amo03g1501 611 MobiDBLite consensus disorder prediction 1 27 - -
Amo03g1501 611 SMART helicmild6 373 455 IPR001650 -
Amo03g1501 611 MobiDBLite consensus disorder prediction 1 22 - -
Amo03g1501 611 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 197 205 IPR000629 -
Amo03g1501 611 SMART DUF4217_3 517 582 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1501 Amo-Chr3 39808728 39816395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1501 34 487 Eukaryotic Initiation Factors Gene Family AT3G19760 25.109 3.13e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1501 K14806 - gmx:100805157 939.488