Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1467 ATGTCTGCGAATTCCGAGAATGTTGGGGTTTGTTCTCTTTGCCAGAAGGCATTATCTCCTGATAATGAGATGACAAGTGATCCTGCAACAGTTGGTGTATGTGGTGATTGTAAATTTTTATTGCTCGAGGACTATGGGAATCATATGGTTACCCCTCAGAGCATGCAAAGAAGGTTTAGAGGCCGGTTCAGGCGCAACAGCTCTGAGTCGGTTGACAACATGGTTAATAATTTGAGGCAAAGCAGATCTGCGACTGCTTCTTTGGAGGACGTTCAACAAATTGTGGAGGGGGATGCCGCTGCTTGGTCGACGCAGCATGCTAGTTTACATAATACCCCTAGTGGTTCTAGGAGATGGAGGCGGGTTCTCTCTGATACCGACAGCGATGGTTTTGATAATTGGAGCTCACTTTACGGTGAAAATGAATCAAATGAAAGCTTTAGACGGTATAGGATTCCTCATGGTGAGACTGATTCCCTCTCTTTCAGTGTTTATGGAGGTGACTCAGATGTCTCTGTGGATAGACATAGTATTATACATAGAGGAATGTTTGGTTTACCGGATGTGGGAGATGAGTTTGATAGTGACACCGATATAGATCCAATGCATGCTGGTGTCAGTCACTGGCACTCAGATGATATGGAAGATGATGAGGAAGAGGAGGAGGACAATGAGGACGATGATGATGAGGAGGAGGAGGAAGAGGATGTCGAACGGGAATGGGAAATAGCTGATGCTGTAGAAGCGGAAGCCACAGCTCGGCTTCAAATGTTTTTCACCTCAAATTCGAGTGCAAGTAGGGGTAGCAATGTACGGGTACAAAGGTTTGATTCCGCTGAATCTGAGGTGGTCCAAATGGTCAGTAACTGGGGAGCTGACTTGGAGGATACTGGCTTACATCCCTATGGTGCCAACTTTGGGGACTATCTCGATGCTAGACAATTCGAAGATTTTCTTGAGCATCTTGCTGAGAATGACAATTCGAGACGAGGAGCACCTCCTGCATCTTTGTCATTTGTGAACAATCTTCCCCGCGTAGTCGTTGACAAGGACCATGAGAAGCATGGTGAACTAGTTTGTGCCATTTGCAAGGATGCATTGGTACTTGGGACTGAAGCTAGTCAGCTTCCRTGCTCTCACCTTTATCATGGAAGTTGCATTTTACCGTGGTTGAGCACACGGAATTCATGTCCTCTCTGTCGCTATGAGCTTCCAACTGATGACAAAGATTACGAAGAGGGAAAGCAGAAYGGTGTTCTTCRACATGTAAACCATGACAGGCAGCAACTAGAGATGGTGGATGTGGATGATAGTTCCTCTGATGTCTCTGTCTTGGCTGAAGTAAACGAAGCAGATAGTATTAGTCAAAGTGTAATACATCATACAGAAGTTGTAAGTTCGAATTCTTCCACAAATTCTTCGGCGGTAAGAGGTGGTAGAGGAAGATGGTTTTTTCTTGCCGCGGCTCCAATAGTTAGTTTAGTTGGCATTGTGCTTGTCCTGTGGTTAGGTAACTCACAGATTGAAGGGAATAGGCATCTCAGCGGGCGCAACATGTCCGCACAAGATCATCATACGGTTAATGTTTATGCCACACCCGTCCAAAGGGAGAGCAGAAGCAGAAGATGGTGGTGCCCTTTCTAA 1644 0.4562 MSANSENVGVCSLCQKALSPDNEMTSDPATVGVCGDCKFLLLEDYGNHMVTPQSMQRRFRGRFRRNSSESVDNMVNNLRQSRSATASLEDVQQIVEGDAAAWSTQHASLHNTPSGSRRWRRVLSDTDSDGFDNWSSLYGENESNESFRRYRIPHGETDSLSFSVYGGDSDVSVDRHSIIHRGMFGLPDVGDEFDSDTDIDPMHAGVSHWHSDDMEDDEEEEEDNEDDDDEEEEEEDVEREWEIADAVEAEATARLQMFFTSNSSASRGSNVRVQRFDSAESEVVQMVSNWGADLEDTGLHPYGANFGDYLDARQFEDFLEHLAENDNSRRGAPPASLSFVNNLPRVVVDKDHEKHGELVCAICKDALVLGTEASQLPCSHLYHGSCILPWLSTRNSCPLCRYELPTDDKDYEEGKQNGVLXHVNHDRQQLEMVDVDDSSSDVSVLAEVNEADSISQSVIHHTEVVSSNSSTNSSAVRGGRGRWFFLAAAPIVSLVGIVLVLWLGNSQIEGNRHLSGRNMSAQDHHTVNVYATPVQRESRSRRWWCPF* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1467 547 MobiDBLite consensus disorder prediction 213 239 - -
Amo03g1467 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 407 IPR013083 -
Amo03g1467 547 Coils Coil 214 234 - -
Amo03g1467 547 ProSiteProfiles Zinc finger RING-type profile. 360 401 IPR001841 -
Amo03g1467 547 PANTHER OS06G0101300 PROTEIN 284 450 - -
Amo03g1467 547 MobiDBLite consensus disorder prediction 189 239 - -
Amo03g1467 547 Pfam Ring finger domain 360 401 IPR001841 -
Amo03g1467 547 MobiDBLite consensus disorder prediction 196 212 - -
Amo03g1467 547 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 284 450 - -
Amo03g1467 547 SUPERFAMILY RING/U-box 342 407 - -
Amo03g1467 547 SMART ring_2 360 400 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1467 Amo-Chr3 37930008 37932998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1467 1 547 C3H Transcription Factor Family AT5G01980 39.895 1.20e-111 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1467 - - gmx:100800933 666.766