Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1434 ATGGCATTAAAAGAGAAAGGTATTTGTGCTGAATTTCTCTCCTCAACAATATCAACTGAGGCAAAAAATAAGATTCATGACGATCTTGATTCTGGAAAACCCTCTACAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACAGCGGGGTTTATGCCAAAGCTGAAAAAGATTTACGCTAGGGGGCTGCTAAGTCTCATTGCCATAGATGAGGCACATTGCATCTCAAGTTGGGGCCATGATTTCAGACCAAGTTACCGTCAACTTTCATTGTTGAGAAGCCACCTACCAGATGTTCCAATATTAGCTCTAACTGCTACTGCTGCTCCTAAGGTTCAGAAGGATGTTGTACAGTCTTTGCATTTGCAAAATCCATTAATTCTTAAATCTTCTTTTAACCGTCCTAATATCTATTATGAAGTTCGATATAAAGATCTTCTGGATGATGCTTATGCCGATTTATCTAATACATTAAAATCTAAGGGAGATGTTTGTGCAATAGTTTACTGTCTTGAACGTTCAATGTGTGATGAATTGTCAGCTCATCTATCCCAAAATGGCATTTCCTGTGCTGCTTATCATGCAGGATTGAATAAGAAAATGCGAACGTCTGTGTTAGATGAGTGGATTTCTTCCAAAATACAAGTTGTTGTTGCCACTGTTGCTTTCGGAATGGGGATTGATAGAAAGGATGTAAGAATTGTATGCCACTTCAATATTCCCAAGTCAATGGAAGGATTTTATCAAGAGTCAGGCAGAGCAGGTCGTGATCAACTGCCCTGTACAAGTCTGCTGTACTACGGGGTAGATGATCGCAAAAGAATGGAATTCATATTAAGAAATTCAGGAAGCAAGAAATCCCAATCATCTACTTCACAGGAAGAATCATCAAAAAAGTCAATGGCTGACTTTACCCAGATGGTTGAATATTGTGAAGGATCTGGATGTCGTAGGAAAAGGATTCTCGAGAGTTTTGGGGAGAAGGTTACTGCATCCCTGTGTGAAAAAACATGTGATGCTTGCAGACATCCAAACTTAGTTGCCCGAAATTTGGAGGATCTGACAACTGCCATTGCTCTGCGCCAGAAAGGCGGTTCTTCTCGAATTTTCATCACCAGTTCTTCTGATGCAATCAACGGAGAACAGTTATCTGAATTCTGGAATCGTGGTGATGAAGCAATTGGCTCAGATGATGATATATCTGACTCCGATGATGGTAATGAGGTTGTCAACAACCTAACCAAGTCAAAGCTTCATTCTAGAGTGGGAGTAAATGAAAAGCTTGCTATGTTAGAACGTGCAGAAGAAAACTTCTATCGAAATGAGAAAGCTAAGAAACAGAGTAAAGTTGACAAGAATGCTATTTCTGATGCAATGCGAGAATCAAGCAGGCAAAGATTACAAAATGCTCTGAAACAGGCTCAGCAGCGACTTGACAACTTAAAGATTGAGTTGGAGACATCAGCATCTTTCCTTGAAGATGAATGCTACAAGAAATATAGCAAAACTGGCAAATCATTCTATTATTCACAAGTGGCGAGCACGGTTAGGTGGCTGGCAACGACAAGTTCRGTTGATATGTTGAACCGACTTGGCYCAATGAAGGAATCTACATCAATGGATGCTGTTCCTGAAGCTGAAGGTCGCACCCCACCACATGCTATAGATCATTCTGGAAAGGAAGGTACAAGTAATGAACTCTCGGGCAATGCTCAGTCAGAAATTTTGCCTTGCGGTGACAGGGGCATGCCAGTAGAAAGTTCTTCCGTTAATACAAAGCTGCCACAGATTCCGTCGTTCTATGAATTTGTTAATAGTAGGAAAACAAAAGGTGACCAATTAGATGACACAAAAAAGAACTCATCTAGAGTAGAAAAGAAAATGAGAGTACAGTAG 1896 0.404 MALKEKGICAEFLSSTISTEAKNKIHDDLDSGKPSTRLLYVTPELIATAGFMPKLKKIYARGLLSLIAIDEAHCISSWGHDFRPSYRQLSLLRSHLPDVPILALTATAAPKVQKDVVQSLHLQNPLILKSSFNRPNIYYEVRYKDLLDDAYADLSNTLKSKGDVCAIVYCLERSMCDELSAHLSQNGISCAAYHAGLNKKMRTSVLDEWISSKIQVVVATVAFGMGIDRKDVRIVCHFNIPKSMEGFYQESGRAGRDQLPCTSLLYYGVDDRKRMEFILRNSGSKKSQSSTSQEESSKKSMADFTQMVEYCEGSGCRRKRILESFGEKVTASLCEKTCDACRHPNLVARNLEDLTTAIALRQKGGSSRIFITSSSDAINGEQLSEFWNRGDEAIGSDDDISDSDDGNEVVNNLTKSKLHSRVGVNEKLAMLERAEENFYRNEKAKKQSKVDKNAISDAMRESSRQRLQNALKQAQQRLDNLKIELETSASFLEDECYKKYSKTGKSFYYSQVASTVRWLATTSSVDMLNRLGXMKESTSMDAVPEAEGRTPPHAIDHSGKEGTSNELSGNAQSEILPCGDRGMPVESSSVNTKLPQIPSFYEFVNSRKTKGDQLDDTKKNSSRVEKKMRVQ* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1434 631 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 146 298 IPR001650 -
Amo03g1434 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 126 IPR027417 -
Amo03g1434 631 Pfam RecQ zinc-binding 271 342 IPR032284 -
Amo03g1434 631 CDD DEXHc_RecQ 1 133 - -
Amo03g1434 631 MobiDBLite consensus disorder prediction 281 299 - -
Amo03g1434 631 MobiDBLite consensus disorder prediction 538 631 - -
Amo03g1434 631 Gene3D - 1 133 IPR027417 -
Amo03g1434 631 MobiDBLite consensus disorder prediction 280 299 - -
Amo03g1434 631 Gene3D - 134 360 IPR027417 -
Amo03g1434 631 Pfam Helicase conserved C-terminal domain 154 256 IPR001650 -
Amo03g1434 631 MobiDBLite consensus disorder prediction 608 631 - -
Amo03g1434 631 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 1 615 - -
Amo03g1434 631 MobiDBLite consensus disorder prediction 585 603 - -
Amo03g1434 631 Coils Coil 464 484 - -
Amo03g1434 631 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 2 353 IPR004589 GO:0004386|GO:0006310
Amo03g1434 631 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 615 - -
Amo03g1434 631 SMART helicmild6 177 258 IPR001650 -
Amo03g1434 631 CDD SF2_C_RecQ 134 267 - -
Amo03g1434 631 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 126 IPR014001 -
Amo03g1434 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 362 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1434 Amo-Chr3 36537194 36543673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1434 5 281 Eukaryotic Initiation Factors Gene Family AT3G19760 23.264 2.10e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1434 - K10901 gmx:100819601 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2768 13 57831781 57839205 Amo03g1434 03 36537194 36543673 hybridization