Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo03g1410 | ATGGTTAAAGGAGTGTGGTTAGTTGGCCCAAAATGCCAATTATCAGTGTTTGGAAGGTGGTGGGGTTCCTCTATCTATAAAGCAAAGAGAGAAATTCAGAGTTTCATTAATCAAAAACCCAGAAAACCCGTAATCTTCAAAATCCAATCTTCCAACTTGTCAAAGCTGTTTTACCTTCCTCGGTGGTTGAACAAGTTTTCATATCAATTTGGTTCACTCTTTCCATGTTTATTGATCCTTCTTGATTCAGAAACAATCTGTTGTTCTAAATTGGTGTTCGAATCGGCATTGATAAAGAAAATGGGCCTCTCAAGTCTGCCATCGCCGTCCGAAGGAGTGCTATGTGCACTTCTTGTTAACACTGTGCTCTCAGTCTCCATATTTAAAGGCATTGTTAGGACAATCCTTCACATTGTTGGCATCCACCTTTCATCATCCTCTTCGCCGAACGCCACCTCCCAGAGCCATCAACCATCCGAGTCATTCGAGTTCCTCCTTAGCCCCTCAGAAACATTCATCGAAGAGTTTAGGAGCCGGACGCCTACAATCCGCTTCGACAGCATGTTCTCCTGTGGGAAACCTGAACATGACTGCTGTGTGTGCCTCTCTCAATTTGAGCCGGAATCTGAGATAAACCGCTTGCCCTGCGGCCATCTCTTCCACAAAGTGTGCTTGGAGAAGTGGTTGGATTATTGGAACATCACATGCCCACTTTGCAGGAACCCTTTGATGCCTGAAGACAATGATCCATGGCTCTTAGTAAGCAATGAATGA | 774 | 0.4444 | MVKGVWLVGPKCQLSVFGRWWGSSIYKAKREIQSFINQKPRKPVIFKIQSSNLSKLFYLPRWLNKFSYQFGSLFPCLLILLDSETICCSKLVFESALIKKMGLSSLPSPSEGVLCALLVNTVLSVSIFKGIVRTILHIVGIHLSSSSSPNATSQSHQPSESFEFLLSPSETFIEEFRSRTPTIRFDSMFSCGKPEHDCCVCLSQFEPESEINRLPCGHLFHKVCLEKWLDYWNITCPLCRNPLMPEDNDPWLLVSNE* | 258 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo03g1410 | 257 | SUPERFAMILY | RING/U-box | 191 | 246 | - | - | |
| Amo03g1410 | 257 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 167 | 245 | IPR013083 | - | |
| Amo03g1410 | 257 | SMART | ringv_2 | 197 | 240 | IPR011016 | GO:0008270 | |
| Amo03g1410 | 257 | Pfam | Ring finger domain | 197 | 240 | IPR001841 | - | |
| Amo03g1410 | 257 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 101 | 248 | - | - | |
| Amo03g1410 | 257 | ProSiteProfiles | Zinc finger RING-type profile. | 198 | 240 | IPR001841 | - | |
| Amo03g1410 | 257 | SMART | ring_2 | 198 | 239 | IPR001841 | - | |
| Amo03g1410 | 257 | PANTHER | - | 101 | 248 | IPR044249 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo03g1410 | Amo-Chr3 | 35469682 | 35471757 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo03g1410 | 101 | 248 | C3H Transcription Factor Family | AT2G04240 | 59.355 | 7.64e-54 | 169 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo03g1410 | K16285 | - | gmx:100786803 | 247.284 |