Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1406 ATGACTCTCGAAGACTTCTTTACTTTGACTGAGATGAGAGATGGGCTCACTGCCCCTTCTCGAGTCCAGGAGTTGGTCTCTGAAATGCAAAAGGAGCAAGATAGTGTTGTTAAGAATGCTTGTGATGCAACGAGGCAGTGGGCTGCTGTTGCAAGCACCATTGCTGCTACTGAAAATAAAGATTGTCTTGATCTATTTATTCAATTAGATGGTCTTTTGTTCATCAATAGATGGTTAAATGAGTCACACAATTTTGGCGCTGATGCAAATGATGGCTTCATTGAAGAGTCAATTTCAGCATTATTACGGGCAATTGAAAAGCTGCAACTTGACAGCAAGAAGTCAATCTCATCAGGAATTTGGGGAACTGTACATAAGCTTCTTGGCCACCATAGCTCTAGAGTTCGAGATCGGGCAAGACAATTATTTGACAGCTGGGAAGGAGGTGAAAATGGTGAGGTTGAACCTCAAGTTGACAGATCGAGTGATAAAATTGCCAAGGAGGAATGCCAGCCATCTGCTGTGACAGAAGGTGGCAATGATGATGGTCATGCATCAGAAACTGTAGTAGGTGAGAAGTCTCAATTGAGAAGGTCAGATAGCATGCTACCAGAAAAAGTTGCTACCGAACAGATACCAAGTTCTGACAATGCACCTGAGTCTTCTGTAAGTTTGGATTCTGAACATCTCAAAGAAAAAGCAAACCATTTTTCTAGTGTTTTGACTCCCGTCCAAGAAGTTGCTCCCATAAGTGAAGGTGTGGCCACAGTAACTGAGATCTGTAACTCTCATATTCCAAAACCAGGAAATTTTAAAGGAGAGCCAGATGATGTACAGTTGAATGACTTATCCAAAGCGGAGAAGCTAGAGCAAAATAATAGTGTCCCTCCCGAAAATTCAGGAATAGCAGATAGCTCTTTTTCATCCTCAAAGCTAGGGCATGGACCTGTTTCTTTGGGTGCGACTGAAACAAATGCACCCGAATCTGTGAAAGAACCTACTTTAGAACATAATGATGAGAACAATGAGAATGGTGTTTGTCATATAATGGCTGTTCCTTGCGACATGAGAACACCTGCATCTGATGCAAAGAGTGCGGTGGATGACGTAGAAGCTATAAATTCTAGCAATCCCCAGCCCCCAAAAGCTTCAGAAAATGATAATGAATGCGTTTCTAATATGTTGCAGGACTCATCAGTCAGGGACAGAAACCTGGGAAAGTCAGAGCAGCTAGAGATGCCTTTTCTTTCAACAGAATATGTTAAAGGAGTAACAGAGGGCAAGGGCCAAGTATCCAATCAAGGAAATGGGGCCTCAAGTTATGGCAGTGAACGTGAGTATGATAATGTTGATAACAATGCCTTAAAAGGTGCTCGACAAGTTTCTTTGGAAAAGGGCCAAGTTTCTAACAAAGTCATTGATGCCTCGAATGGTTCTGATTCTTCTAGAAGGAGGAAGCGGCCCAGAATCCCAAACCTTATCAAGAAAACTTCCGATATTGAACTCGAGTATGGGATTGTTGATGCTTTAGAAGTTGCTCGACAAGTTGCTCAGGAAGTTGAGAGAGAAGTCCGCAGCTCATCTTCAGAGGAAATTTCAGAAGGCAGAATAAGGCGACCAGGGAGTTCAGGCAGTCCAGTTTCTTCAGATAATAAATATGAACTAACCCATGTCCTGCCTGAGGAGGTATCGTCCAGGCAAAGCAACTCTGCTGATGCATGTTCTGAACAGGATGGACATATGAGTTACTCAGACAATATTGAGGCCCAGGCACAGCCAGAATGCTTACCTGACTTGGAGTCCTCACAGGTGACTGAAGCAGCTCAAGATCCAGGAGGTAATTCAGAGAAAAGCCTGTGTACCTTCGATCTGAATGAAGAAATTGGTTCAAATGGTATGGACGTGTCAGTAAATACTATGCCTGCCGCACCAATACCAGTTGTCTCTGTTTCAAAGCCTGCACAGAGTTCTGGGCCGCCAACTGCTCCTTTGCAGTTTGAAGGGACACTTGGATGGAAAGGATCAGCTGTCACTAGTGCCTTTCGTCCTGCATCACCTCGTAGAAGTTCTGATAGTGAGAGGAATGTTTCTGTTGGTGGGAACTCAGATAGTTCCAAGCGAAGGCATGATTTCCTCGATATTGATTTGAATGTGGCTGATGGGGATGAAGAACTGGTAAAACAAAAATCCTCAGGCCTTCCTTTTGAGCAGTCATTAGCGGAACTTAATCCTAAACAGTCCAGCAGGCTTGACTTGGATTTAAACAGTGTTGGTGACGATGGTGACATCCAACCTTCAAATCGCAGAACAGAAGCGCAACTGTTTTCCCAAAGAAATGACTTTTGGAGTCCGTTACATGGAGCATCGTCGTCATCAATGCAGCCTTCAGTTCGCAACATTGATCTGAATGACAGACCATATTTTCAAACTGCTTTGGTGGAACAAGGGCCTAGTAAGTCTTTGTTTATGGATTCATATGGGCGTTCAAAGTCAGATGCTCCTGTGATCTCTATTTTGGGTGCCAAGGTGGAAGTTGATAGGAGAGAACATGTTCCTCAAACGATATCTATTCCAAATGGCAAAGGTATTGAGCCTGTCATCGATCTTACAATGTCAGGAGCAGGTGCCATGTTGGGGATGTGCCCTTCAGTATCTTACAGTAAGTCAGCTGTTTTCGGGTATAATGGCCTGACATCAGGCCCCCATCTATCATTTTCGTCAGCCATGTATGCATCTGGTGGCACAATTCCATACATGGTGGACTCAAGAGGTGCTCCTGTGGTTCCTCAAGTTGGGGGGTCTTCATCAACCATTCTGCCATCTTACTCTCAGCCTCCAGTTGTCGTGAACATGGCCGGTACACAACTCAGTTTAAATGGGGTCGGGTCTTCGCCTCCAAACTTTGATTTAAATTCCAACTTCATGACTGATGGTGGACCTAGAGATACATTGGCTGCAAGGCAGTTTTTCTTTCCCTCTTCTGGAAGAGCTTTGGAGGAGCATGCTAGGACCATTCCGCAATCCTCAAGTTCTGGGGGTGATGGAAAAAGAAAGGAACCAGACAGTGGCTGGGATCCTTATCCATTTAGCTACAGAGGTCCTCAACCTCCATGGAAGTAG 3120 0.4433 MTLEDFFTLTEMRDGLTAPSRVQELVSEMQKEQDSVVKNACDATRQWAAVASTIAATENKDCLDLFIQLDGLLFINRWLNESHNFGADANDGFIEESISALLRAIEKLQLDSKKSISSGIWGTVHKLLGHHSSRVRDRARQLFDSWEGGENGEVEPQVDRSSDKIAKEECQPSAVTEGGNDDGHASETVVGEKSQLRRSDSMLPEKVATEQIPSSDNAPESSVSLDSEHLKEKANHFSSVLTPVQEVAPISEGVATVTEICNSHIPKPGNFKGEPDDVQLNDLSKAEKLEQNNSVPPENSGIADSSFSSSKLGHGPVSLGATETNAPESVKEPTLEHNDENNENGVCHIMAVPCDMRTPASDAKSAVDDVEAINSSNPQPPKASENDNECVSNMLQDSSVRDRNLGKSEQLEMPFLSTEYVKGVTEGKGQVSNQGNGASSYGSEREYDNVDNNALKGARQVSLEKGQVSNKVIDASNGSDSSRRRKRPRIPNLIKKTSDIELEYGIVDALEVARQVAQEVEREVRSSSSEEISEGRIRRPGSSGSPVSSDNKYELTHVLPEEVSSRQSNSADACSEQDGHMSYSDNIEAQAQPECLPDLESSQVTEAAQDPGGNSEKSLCTFDLNEEIGSNGMDVSVNTMPAAPIPVVSVSKPAQSSGPPTAPLQFEGTLGWKGSAVTSAFRPASPRRSSDSERNVSVGGNSDSSKRRHDFLDIDLNVADGDEELVKQKSSGLPFEQSLAELNPKQSSRLDLDLNSVGDDGDIQPSNRRTEAQLFSQRNDFWSPLHGASSSSMQPSVRNIDLNDRPYFQTALVEQGPSKSLFMDSYGRSKSDAPVISILGAKVEVDRREHVPQTISIPNGKGIEPVIDLTMSGAGAMLGMCPSVSYSKSAVFGYNGLTSGPHLSFSSAMYASGGTIPYMVDSRGAPVVPQVGGSSSTILPSYSQPPVVVNMAGTQLSLNGVGSSPPNFDLNSNFMTDGGPRDTLAARQFFFPSSGRALEEHARTIPQSSSSGGDGKRKEPDSGWDPYPFSYRGPQPPWK* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1406 1039 MobiDBLite consensus disorder prediction 520 537 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 463 477 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 682 702 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 679 707 - -
Amo03g1406 1039 Pfam TFIIS helical bundle-like domain 101 146 IPR017923 -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 153 167 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 427 446 - -
Amo03g1406 1039 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 1039 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 146 230 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 370 389 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 561 580 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 186 204 - -
Amo03g1406 1039 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 16 148 IPR035441 -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 290 315 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 997 1039 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 290 342 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 460 491 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 520 551 - -
Amo03g1406 1039 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 154 IPR035441 -
Amo03g1406 1039 Coils Coil 510 530 - -
Amo03g1406 1039 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 1039 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 208 224 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 359 389 - -
Amo03g1406 1039 MobiDBLite consensus disorder prediction 426 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1406 Amo-Chr3 34692142 34698144 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo03g1406 Med26 9.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1406 - - adu:107479123 1997.63