Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1355 ATGTCCATAAACGAGGATGATGTGAAGATTGATTCTGATAATGATTTAGGTGATGATTTCGATTATCAACCGAATGCAGAAGACGATGCTGAAGACGACGATGTGGATTCGCTGGATTCTACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCAGATTTAATGGTGGAGGATATTTGGCACCTGGAGTTTAGGACAGAGGATGAGGCCTGCCAGTTTTATAACGCTTATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGCAGGCAACTTGTTTGCAACAAAGAGGGCTGGAGGAATATGAGGTATCTCCATCTGGATGATAGATCAAGAGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTACAGCTGCGGTAGATGGAAGGTATCATGTTTTGTCGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCGCATCTGACGTACGAAACTCGTGAGATGTGGTCCCATTGTTTCATCCGAGATAAGTTTTTCGGTTACATAAGGACGACATCACAGTGTGAAGGTATAAATTCTCTCATCAGATTTTATGTTAATCGCAAGAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAACGACTTAATAGCTGACTATAAGTCTCAATGCTCAGAGCCATTGATGATTACCTCGTTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACGCGAAACATTTTCAAGGAAATTCATAATGAGATTCAGAGGGCAGGGGCTTTGAATATAACGATACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTGCTCTCGGAGACCCGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAAGCTGTTCTCATGCTCGTGCAAGCTGTTTGAATCACGTGGTATTCCCTGTAGTCATATCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATATACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCATGTGAATGATGACATCGAAAGCATCTTAAAGTTTCGAGTTGGAGCATTGGCATCGAATTGCAACAAGCTGTGTGATATTGCTTGCAAGGATCTTGCAGACTTTGATGAAGTCCAGTCTGAACTTGTCAATTTAGTTATCCGCYTGCAGTCACGCAAACAAGGCAAGTCAACTCCTAATGTTAACRTGGAAGGCATCAACGATCCATTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAAGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGCTGTCCAGATCTGATGCAGCATAGTGTGGAAGGTAACCATCGCGATCGATCATACGRCAATGCATCAGCCAAGGACTCARGTTTTAGTCCAGARAGGKTTGCTAATTCTTCGAGGTCGTTCTCAATTAAGTCCGAACACTACTCAGGACCTAATACCAAGCCTTTTAAAAAGGGTGGAACAAGGAAGTTTACGGCGACGGGTATGAGGAACCGGAAGGGTAAAGACAATACTTTTGTTGAGCGGAGCCTCCATGAAAGCAGCGAATCCATTGACATCGCGTCTATGAATGGTGTTTTCAATAAAAATCTCTACTCGTTAACACAGATCGATGTTCGAGATCCGTTACCATCGTCACTGCCTTGTGGCAACAAACAAGGATCGTACATGGCATTGTTCGCGTCGATGCACAGGACACTTTGA 1830 0.4322 MSINEDDVKIDSDNDLGDDFDYQPNAEDDAEDDDVDSLDSTSKSEEVCGVKRIADLMVEDIWHLEFRTEDEACQFYNAYSCWHGFVMRKDDVVRDNQGRIISRQLVCNKEGWRNMRYLHLDDRSREARSLTRTKCPARLRVKLDYSCGRWKVSCFVESHNHDLTPPQFAHLTYETREMWSHCFIRDKFFGYIRTTSQCEGINSLIRFYVNRKNTLIDFMHNLDRALKEYRNNDLIADYKSQCSEPLMITSLEVYERSASCYFTRNIFKEIHNEIQRAGALNITILSTTLDKVEFSVTALGDPAKDRRVEVDRGKKLFSCSCKLFESRGIPCSHIFCAMKFENILEFPDSLIYKRWTKNAKNEFISTEMHVNDDIESILKFRVGALASNCNKLCDIACKDLADFDEVQSELVNLVIRLQSRKQGKSTPNVNXEGINDPFVVKSKGAPSKKSSWRKKRACSNCHKYGHYYKRCPDLMQHSVEGNHRDRSYXNASAKDSXFSPERXANSSRSFSIKSEHYSGPNTKPFKKGGTRKFTATGMRNRKGKDNTFVERSLHESSESIDIASMNGVFNKNLYSLTQIDVRDPLPSSLPCGNKQGSYMALFASMHRTL* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1355 609 MobiDBLite consensus disorder prediction 1 40 - -
Amo03g1355 609 MobiDBLite consensus disorder prediction 499 518 - -
Amo03g1355 609 Pfam FAR1 DNA-binding domain 74 164 IPR004330 -
Amo03g1355 609 PANTHER OS03G0181600 PROTEIN 173 414 - -
Amo03g1355 609 PANTHER OS03G0181600 PROTEIN 57 171 - -
Amo03g1355 609 SUPERFAMILY Retrovirus zinc finger-like domains 444 476 IPR036875 GO:0003676|GO:0008270
Amo03g1355 609 SMART 26again6 317 344 IPR006564 GO:0008270
Amo03g1355 609 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 173 414 IPR031052 GO:0006355
Amo03g1355 609 ProSiteProfiles Zinc finger CCHC-type profile. 458 473 IPR001878 GO:0003676|GO:0008270
Amo03g1355 609 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 171 IPR031052 GO:0006355
Amo03g1355 609 ProSiteProfiles Zinc finger SWIM-type profile. 306 342 IPR007527 GO:0008270
Amo03g1355 609 MobiDBLite consensus disorder prediction 482 538 - -
Amo03g1355 609 MobiDBLite consensus disorder prediction 11 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1355 Amo-Chr3 32922664 32925666 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo03g1355 FAR1 1.1e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1355 - - aip:107640898 1046.96