Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1351 ATGGCAACTAGACTACAGTTTGAGAATAATTGTGAAGTTGGAGTGTTTTCTAAACTTACTAATGCCTATTGTTTGGTTGCCATAGGAGGATCCGAAAACTTCTATAGTGTGTTTGAATCTGAGTTAGCAGACGTCATCCCTGTAGTCAAAACATCCATTGGTGGAACTCGAATTATTGGTCGCCTTTGTGCAGGAAACAAAAATGGGCTTCTGCTGCCCCATACAACTACAGACCAAGAACTTCAACATTTGAGAAACTGTCTGCCCGATCAAGTAGTCGTTCAGAGAATAGAAGAAAGATTATCTGCTCTCGGAAATTGTATAGCTTGTAATGACCATGTGGCTCTCACTCACACCGATCTTGACAGGGAGACGGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATTGCCGGCAATATTCTTGTCGGTAGCTACTGTGCCTTCTCCAACAGAGGGGGCTTGGTCCACCCTCATACTTCCATAGAAGACTTGGATGAGCTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACGGTGAACCGTGGCAGTGAAGTGATAGCTGCTGGAATGACAGTGAATGACTGGACGGCATTTTGTGGCTCGGACACCACAGCGACAGAGCTGTCTGTGATTGAGAGTGTTTTCAAACTGAGGGAGGCACAGCCTAGTGCCATTGTGGATGAGATGAGAAAATCTCTCATTGATAGCTATGTCTAA 738 0.4512 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSVFESELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNCLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDSYV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1351 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Amo03g1351 245 Gene3D - 1 225 - -
Amo03g1351 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 - -
Amo03g1351 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Amo03g1351 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Amo03g1351 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Amo03g1351 245 SUPERFAMILY Pentein 1 224 - -
Amo03g1351 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Amo03g1351 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 IPR002769 GO:0042256|GO:0043022
Amo03g1351 245 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 224 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1351 Amo-Chr3 32889380 32892451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1351 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 92.245 5.09e-174 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1351 K03264 - ming:122066887 476.092