Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1349 ATGGTGGATAGGGATTCAAGCGGAGCACACATGTCAATAGCAGCTTCTTCCATGTTTCCTGGCTTTAGGTTCTGTCCCACTGACCATGAGTTGATCTCTTATTACCTCAGAAAAAAATTGGATGGTGACGAGGACAGTGTTCAGATTATTTCCGAGCTTGAACTTTGCACCTTTGAGCCTTGGGATTTGCCTGAAAAATCGTTCATTAAATCAAACGATGAGTGGTTTTTTTTCTCGCGACGAGGGAGAAAGTATCCTAATGGTTCACAAATTAAAAGGGCAACTAAACATGGGTATTGGAGGGTCACATGCAATGAACGACAGATAAAGTCTGGTCAAAATGTGATTGGTACCAAACGCACCTTGGTATTCCATGTCGGCCGAGCTCCTAAAGGCCAGAGAACTGAATGGATTATTCATGAGTACTGCATCAATGACAAATTTCAGGATTCTTTGGTGGTTTGTCGGCTCAAGAGAAACACAAAATTCCATGCGAGTGATAGTTCTAACAAAGCTTTACGCAAGAGTGGTGGTGGAGTCTCAGAAGGGGTTACAGTTCAAAGGAGCACTTGTGTGCCTATTCAAGATCGTTCTAACAAAACTTCATGCAAGAGTAGTGCTTCACGCAAGAGTAGTTGTGGAGTCTCGGAAGGGATTACAATTCAAAGGAGCACTTGTGCGCCTATTCAAGATCGTTCTAACAAAGCTTCACGCAAGAGTAGTTCTTCACGCAAGAGTAGTTGTGGAGTTTCGAAAGGGGTTACGGTTCAAAGGAGCACTTGTGTGCTTATTCAAGATCGTATTAACAAAGCTTCACGCAAGAATTGTTGTGGAGTCTCAGAAGAAGGAGTTACAGTTCAAAGGAGCACTTGTGTGCCTATTCAAGATAAAGAGGTTGGATGTAGTTCCAAGAAGGGTAACAATAATAATAGTTCTCCTTCTACTACTGCCCAAATTGAATCCAGTCGTATAGTTGCCAATGAAGCCAATCCCAAAGCTTCTTCCGGTCATTCTAAGGTGGTGGACGAAGTGGGTTATTATGCAGAGATCAACTTAGTTGATATCATCAACTTAGATGAAACAGCACTCTGA 1092 0.424 MVDRDSSGAHMSIAASSMFPGFRFCPTDHELISYYLRKKLDGDEDSVQIISELELCTFEPWDLPEKSFIKSNDEWFFFSRRGRKYPNGSQIKRATKHGYWRVTCNERQIKSGQNVIGTKRTLVFHVGRAPKGQRTEWIIHEYCINDKFQDSLVVCRLKRNTKFHASDSSNKALRKSGGGVSEGVTVQRSTCVPIQDRSNKTSCKSSASRKSSCGVSEGITIQRSTCAPIQDRSNKASRKSSSSRKSSCGVSKGVTVQRSTCVLIQDRINKASRKNCCGVSEEGVTVQRSTCVPIQDKEVGCSSKKGNNNNSSPSTTAQIESSRIVANEANPKASSGHSKVVDEVGYYAEINLVDIINLDETAL* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1349 363 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
Amo03g1349 363 ProSiteProfiles NAC domain profile. 18 160 IPR003441 GO:0003677|GO:0006355
Amo03g1349 363 Gene3D NAC domain 27 164 IPR036093 GO:0003677|GO:0006355
Amo03g1349 363 MobiDBLite consensus disorder prediction 228 250 - -
Amo03g1349 363 Pfam No apical meristem (NAM) protein 20 143 IPR003441 GO:0003677|GO:0006355
Amo03g1349 363 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 243 - -
Amo03g1349 363 PANTHER NAC DOMAIN-CONTAINING PROTEIN 89 12 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1349 Amo-Chr3 32868274 32870136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1349 6 166 NAC Transcription Factor Family AT2G27300 66.460 3.52e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo03g1349 NAM 7.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1349 - - adu:107489720 687.567