Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1333 ATGTTAGATAGTGATCTCTTATTACTCACAGGTTACACAACACAACTTTTTTGTGTATTTGTGAGAGATCATCAAAGACATACAATAATAATAATGGGAAGAAGCCCTTGTTGCTCAAAGGAGGGTTTGAACCGCGGTGCCTGGACAGCTCAAGAAGACAAAATCCTCAGAGATTATATCAGTCTCCATGGCCAAGGAAAATGGAGGAACCTTCCTCAAAGAGCAGGGTTGAAACGTTGTGGGAAAAGTTGCAGGCTTCGATGGTTAAATTATCTGAGGCCAGATATTAAAAGAGGAAACATATCAGAAGATGAAGAAGAACTTATCATAAGACTTCACAAGCTACTTGGAAACAGATGGTCACTTATAGCCGGGAGGCTTCCAGGAAGAACAGACAATGAGATCAAGAATTATTGGAACACAAATTTAGGCAAAAGAGTTAGAGATCTTCAAACAATAAGCAGTGCATCTTCTCAGCAACCCAATGAAACAAATAACAACATTCAGAAACCAACAACAATGCCTCCTACAACCAATAAAGTGGTCTCCACAACCACTCCCTCTCTGTCACCGTTAAACGATTCACATTCTCTTCTCGTCCGTACAAAAGCTTCTAAGTGCTCTAAGTCATTATTCTTGGATCATTCATCAACAACAACAACTTCACTGCAGCAGAACAAGACTTCTAGTAATAATAATAATAATAATGACAATAGCCACGAACTCGATGAAACCGCCGCCGATCATGTTTTGCTGCCACCGCCGGGGTTGTTGCTTCCGAGCAACGGTGACAACAACAACACCATGGTGATGATGATGATGGAGATGGGTACCAATTCAGAAGAATACAAAGAGATCTCGACAACAGAATTGCTCTTGGATTTTGACGTTGGCGATATTTGCTTGCATTCTCTTCTGAACTCGGATTTCGAGGATATATGCGATTTCGGTTACAACAACAGTAACAGTAACTGCGAGGATCTGTTTGGATTCTCACCGCCGGAGCAGATGCAGCTGGATTCTTCTGATGAAGTTCTAAAGGAAGCCACCGTACCAAGCAACTTCCCTGACGAAACAAATAATATTGTACAAAACATACAGTTTCTGTGA 1110 0.4117 MLDSDLLLLTGYTTQLFCVFVRDHQRHTIIIMGRSPCCSKEGLNRGAWTAQEDKILRDYISLHGQGKWRNLPQRAGLKRCGKSCRLRWLNYLRPDIKRGNISEDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKRVRDLQTISSASSQQPNETNNNIQKPTTMPPTTNKVVSTTTPSLSPLNDSHSLLVRTKASKCSKSLFLDHSSTTTTSLQQNKTSSNNNNNNDNSHELDETAADHVLLPPPGLLLPSNGDNNNTMVMMMMEMGTNSEEYKEISTTELLLDFDVGDICLHSLLNSDFEDICDFGYNNSNSNCEDLFGFSPPEQMQLDSSDEVLKEATVPSNFPDETNNIVQNIQFL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1333 369 Pfam Myb-like DNA-binding domain 45 92 IPR001005 -
Amo03g1333 369 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Amo03g1333 369 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 32 277 - -
Amo03g1333 369 ProSiteProfiles Myb-like domain profile. 40 92 IPR001005 -
Amo03g1333 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 92 IPR017930 -
Amo03g1333 369 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Amo03g1333 369 MobiDBLite consensus disorder prediction 217 240 - -
Amo03g1333 369 CDD SANT 47 92 IPR001005 -
Amo03g1333 369 MobiDBLite consensus disorder prediction 154 194 - -
Amo03g1333 369 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 32 277 - -
Amo03g1333 369 Gene3D - 101 173 - -
Amo03g1333 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 147 IPR017930 -
Amo03g1333 369 Gene3D - 45 97 - -
Amo03g1333 369 MobiDBLite consensus disorder prediction 217 241 - -
Amo03g1333 369 SUPERFAMILY Homeodomain-like 43 139 IPR009057 -
Amo03g1333 369 SMART sant 44 94 IPR001005 -
Amo03g1333 369 SMART sant 97 145 IPR001005 -
Amo03g1333 369 CDD SANT 102 143 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1333 Amo-Chr3 31965132 31967636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1333 32 198 MYB Transcription Factor Family AT4G38620 54.651 4.10e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo03g1333 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1333 K09422 - gmx:100802704 298.516