Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1331 ATGCCAGATTTTAAACCCTGCATCACATGCTTGTTCTTGATCGTGTCCTCGCTATTATTATTATCCCCAAATGTGGCTTCTTCCTCCGATGAGAATAACTCGGCAGATGAAGTCTTTATCCAGTGTGGGACCGACGAATACGCAGACTTGGGCCCCACCAAGTTCACCCGTACGTTCATGGCTCTTATGGACACGGTTTCAGTTAAGATCAAAGAGCAAGGCTGGAGCGCTGAATCGATTATCAACCCAGTTGCCCCGATTTTCGCACTAGCGGAATGCCGCAACGACCTCAACAATAGCAATTGCTACAAATGCTTCAACCACGCCAGGGAATATTTGTCGCAGTGCTTGCCAAAGGTAGCGGGGAGAGTTTACATGGACGGTTGCTTCCTTCGCTACGATAACTATGGTTTCTTCAACGAGGTATTAGACAAGAAGTACGACCATAGTGTTTGCATAAAGTCTTCCTGGATGGAGAAGATGGAGCGCGGGCGATCGGAGTATAATAGCACCGATAGTAATAATAGCAATGCAACGGACCCCGCTGGGTTCAGGGAAAAGGTTGGGAAGGCGGTAACGAACGTGACGGAGACGGCAGCCACGTCTGTTCACAAATTCGCAGTGAATGGGGATAACAAGGACGTGTTTGCGCTGGCGCAGTGTTGGCACACATTGGAGAGAGAAGGGTGTGAGAGGTGCTTGAAAAGAGCAGAGAGGAAATTGAGTGAGTGCATTATTGTTAATGATGAAGGTAAGAGCATGCTTGCCGGTTGTTTCTTGAAGTATTCCACTCGCAAATTCTACGGTGAAGAATTCGATGAGAACGGAGTCAAGAACAACTACGACAATTCTTATAACAAGGTGATCATTGTATCTCTATCATCAGCGGTTGCTGTGACTTTGATTATTATCACAGGTGTGATGGTTAAGAAAAAGAAAGCACCAATTTGTACAGTAGGAATGGACCGTAGCAAGAGATTTGAGTACGTGGCTGGTTACACTTTTAAATATGAGTTGCTTGAAAAGGCGACCAATTATTTTGATCCTGCATACAAACTAGGGCAGGGTGGAGCTGGTTCTGTATTCAAAGGAACGCTACCTCAAGGAAAGACTGTGGCCGTGAAACGACTGTTTTTCACGACGCGACAGTGGACCGATGGGTTCTTCAATGAGGTTAATTCAATAACAGGGATTACCCACAAGAATGTGGTGAAACTTTTAGGGTGCAGTATTGAAGGCCCGGAAAGCCTCTTGGTTTATGAATTTGTGCCAAATGGGAGTCTTGAGCAAATACTTTTTGGTAAAGACTCAACAACTTTTTTGACCTGGAAGCAACGTTTTAATATCATATGTGGTGTAGCTGAGGCCCTAGCATACCTTCATGGAGGTACTGAATCAAAGATTATTCACAGAGACATTAAGTCCGGGAACATTCTACTTGATGAGAATCTTGATCCGAAAATTGCTGATTTTGGTCTTGCTCGCTTTGTTACGGAAAATAGAAGTCATGTTACCACAGGAATTGCTGGAACATTGGGATATATGGCTCCTGAATATCTTCTTCAAGGACAACTAACAGAAAAAGCAGATGTCTATGCTTTTGGTGTGGTTGTTGCTGAAATTGTATGTGGCAAGAAAAACAGTGTTTATACCCAGGGCTCAACTTCAGTACTCCATTGTATTTGGAAGAATTACAAGGCACAGAACATCACGGCATCAGTTGATCCTGCACTGAATGGTCAATTTGTAGAAGAAGAGGCATCAAATGCCCTCARAGCTGCCCTTCTTTGCACACAGTCCTCTGTTTCTCTTAGACCATCCATGTCTCAAGTGCTTCAGATCCTAACCGATAAAGACTTTGTTGTTCCCTCCCCAAGGCAACGGCCATTCCTAAATTGCACTATGCTGAGCCTAGATGACCGAACACAAGCTACCTCCACCTTCACCCTCACCCCTGAAACTTCACCAAATGGCCCCGCCACCACTAGTGCAAGATCCTCTTTCCATACCACCACAGATTCATTTAGATCAAATACACATGCAATTAATATTGCATTATCTGAAATTCTTCCTATAACGAGGCATGAGTAG 2091 0.4438 MPDFKPCITCLFLIVSSLLLLSPNVASSSDENNSADEVFIQCGTDEYADLGPTKFTRTFMALMDTVSVKIKEQGWSAESIINPVAPIFALAECRNDLNNSNCYKCFNHAREYLSQCLPKVAGRVYMDGCFLRYDNYGFFNEVLDKKYDHSVCIKSSWMEKMERGRSEYNSTDSNNSNATDPAGFREKVGKAVTNVTETAATSVHKFAVNGDNKDVFALAQCWHTLEREGCERCLKRAERKLSECIIVNDEGKSMLAGCFLKYSTRKFYGEEFDENGVKNNYDNSYNKVIIVSLSSAVAVTLIIITGVMVKKKKAPICTVGMDRSKRFEYVAGYTFKYELLEKATNYFDPAYKLGQGGAGSVFKGTLPQGKTVAVKRLFFTTRQWTDGFFNEVNSITGITHKNVVKLLGCSIEGPESLLVYEFVPNGSLEQILFGKDSTTFLTWKQRFNIICGVAEALAYLHGGTESKIIHRDIKSGNILLDENLDPKIADFGLARFVTENRSHVTTGIAGTLGYMAPEYLLQGQLTEKADVYAFGVVVAEIVCGKKNSVYTQGSTSVLHCIWKNYKAQNITASVDPALNGQFVEEEASNALXAALLCTQSSVSLRPSMSQVLQILTDKDFVVPSPRQRPFLNCTMLSLDDRTQATSTFTLTPETSPNGPATTSARSSFHTTTDSFRSNTHAINIALSEILPITRHE* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1331 696 CDD STKc_IRAK 353 616 - -
Amo03g1331 696 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 12 681 - -
Amo03g1331 696 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 12 681 - -
Amo03g1331 696 Gene3D - 34 138 IPR038408 -
Amo03g1331 696 Gene3D - 165 267 IPR038408 -
Amo03g1331 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Amo03g1331 696 Pfam Protein kinase domain 351 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g1331 696 Gene3D Phosphorylase Kinase; domain 1 312 422 - -
Amo03g1331 696 ProSiteProfiles Protein kinase domain profile. 347 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g1331 696 Pfam Salt stress response/antifungal 176 264 IPR002902 -
Amo03g1331 696 Pfam Salt stress response/antifungal 52 136 IPR002902 -
Amo03g1331 696 Gene3D Transferase(Phosphotransferase) domain 1 423 622 - -
Amo03g1331 696 SUPERFAMILY Protein kinase-like (PK-like) 333 644 IPR011009 -
Amo03g1331 696 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
Amo03g1331 696 MobiDBLite consensus disorder prediction 644 672 - -
Amo03g1331 696 ProSiteProfiles Gnk2-homologous domain profile. 166 267 IPR002902 -
Amo03g1331 696 SMART serkin_6 347 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1331 Amo-Chr3 31896323 31899301 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1331 1 646 Receptor kinase-like Gene Family AT1G70520 37.216 9.82e-136 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo03g1331 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1331 - - ahf:112722338 1345.1