Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1310 ATGGCGACTCAAATGAGCAAGAAGAGAAAGTTCGTCGCTGACGGAGTTTTCTTCGCTGAGCTGAACGAGGTTTTGACCAGAGAGCTTGCCGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACACCTATGCGCACTGAAATCATCATTAGGGCCACTCGCACCCAAGCTGTTCTTGGTGAGAAGGGAAGGAGGATTAGGGAGCTAACCTCTGTGGTGCAGAAGAGGTTCAAGTTTCCTGAGAACAGTGTTGAACTCTATGCTGAGAAGGTTAACAACAGGGGTCTGTGTGCTATTGCCCAAGCAGAATCTCTACGTTACAAGCTCCTTGGAGGTCTTGCTGTCAGGAGGGCCTGCTATGGTGTTTTGAGGTTCGTAATGGAAAACGGTGCCAAGGGTTGTGAGGTCATTGTTAGTGGGAAATTGAGGGCACAGAGAGCCAAATCCATGAAGTTCAAGGATGGCTACATGATTTCTTCTGGTCAGCCAGTTAAGGATTACATTGACTCTGCTGTTAGACACGTTCTTCTCAGACAGGGTGTGCTTGGTATCAAAGTCAAGATCATGCTTGATTGGGATCCTAAAGGGAAGGTTGGTCCCAAAACTCCTCTCCCTGATATTGTTACTATCCACCCACCGAAAGAGGAAGAAGATTATATCCGGCCGCCTGCTGCAGTTCTGTCAAGTGAAATTGAAGTTCCTGTTCCTGTTGCATGA 717 0.477 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMENGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKVGPKTPLPDIVTIHPPKEEEDYIRPPAAVLSSEIEVPVPVA* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1310 238 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Amo03g1310 238 CDD 40S_S3_KH 15 95 - -
Amo03g1310 238 Pfam KH domain 20 93 IPR004044 GO:0003723
Amo03g1310 238 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Amo03g1310 238 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Amo03g1310 238 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Amo03g1310 238 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Amo03g1310 238 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 233 - -
Amo03g1310 238 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 233 - -
Amo03g1310 238 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Amo03g1310 238 Gene3D - 1 91 IPR015946 -
Amo03g1310 238 Gene3D - 93 219 IPR036419 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1310 Amo-Chr3 31232081 31234765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1310 1 234 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 86.752 2.12e-149 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1310 K02985 - gmx:100800747 442.965