Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1306 ATGGAGAACGGAGAGGAAAAAGGCGTGGCGGCACATAGAACAGTAGGGACAAAGAACGAGGTTGTTCTTCGAATTCCCGAGAGCGAAAACATCATTTCCTATTCTCCTCAGCAGAAGGGTTCACCCTCAAAAGCCTTCGTAGATTCTTCAAATGTTGAACTAGCAGCTGAACTTCAGAGTCTAAAAAACAGTAGTACTGTTCAATCTCCAACTGCTACCACTTCAACCCGCTCTGTTGGTCGTTCCGAATTCTCGAAGCCAAAATCTAGATTGGTGGAACCGCCACATCCAATAGCCGCAAGCTTTCTTGAAGACAAAACCCAAATCAAGAGCTTCAAATCACCCGCAAGGACTTCCACCAGCAAAAAGACTACTCCTAATGCCACACCTCCAAGGGATGTTCCTATTACCCCAAGAACCCCTTTGATTGGGACTCCAATGGAAGAAGAAGAAGAGGAGGAGGAGGAGTTTTACAAGACCACAAACGTTGAAGTGAGCAAGAAGAGATCTGGCAAGAGGTGGAAGTTCCTGTGTATGATTGAGTGGGTTGGTTTTGTTTCCATAGTTGGGTTCTTGATTGTATCCTTAGCAATCAAAAGGTTGCGAAATTCCGAAATATGGGGCTTGGAGCTGTGGAAATGGTGTGTTCTTGCACTGGTTATCCTCTGTGGGAGACTTGTCACTGGGTGGTTTATAAATGTTATGGTTTTCTTGATTGAAAGGAATTTCTTGTTCAAGAAGAAGGTTCTGTATTTTGTTTATGGTGTGAAGAAGAGTGTTCAAGCATTTTTATGGTTGGGCATTGTTCTTATGGCATGGGGTTTGATTTTCAATCATGGGATTAAGAGATCAAGAAGAGTTAATAGGGTTCTTGATTACATTACAAGATCTCTTGCATCTTGTCTTATTGGGGCAGCTCTATGGTTGGCAAAAATGTTGCTGATTAAGCTACTAGCTTCGCATTTCCAATCGGCTAGGTTTTTCAACCGGATTCAAGAGTCAATTTTTCATCAATACATTCTTCGGACCCTTTCAGGGCCTCCCTTGATGGAAATTGCGGAAAATGTGGGAAAGAATTCAAGTAGCAGCCGGTTGAGTTTTAAGACTTTGGTTAGGGAGAATGGGAATGAAGAGAAGAAAGAAGAGGTCATTGATGTGGAGAAGCTCAAGAAAATGAAACAAGAGAAAGTTTCTGCTTTGACTATGAAAGGATTGATCAATGTGATAAAGAGTTCTGGATTGACCACGATTCTGCCGCAGAGTGTTGATGAAGATGAGAATGAGCAGATAGATAGCGAGATTACTAGTGAGTTGGAAGCAAAGGAGGCAGCATATCGAATTTTCAGCAATGTAGCCAAGCCAGGAAGCAAGTACATTCAGAAGGAAGACCTATTGCGCTTCATGACCAATGAAGAAGTTGAAAACCTGCTTCCGTTATTTGAAGGAGCAGTTGCAACTGGAAGAATCAAGAGGAAGTCTCTCAAGAATTGGCTGGTGAAAGTCTACCAAGAGCGTCAATCCCTTGTGCATTCGCTAAATGATACAAAAACAGCTGTCGATGATTTGAACTTGCTTGCTTCCGTGCTCATCATTATTGTGATCATCATTGTTTGGTTGCTTATAATGGGGTTCCTCACAACCCATGTTCTTCTCTTTATTACATCTCAGCTTTTACTCGCGGTGTTTATATTTGGTAACTCAGCTAAGACTGTCTTTGAAGCTATTATATTTGTTTTCGTGAGGCATCCGTTTGATGTTGGCGATCGTTGTGTCATCGATGGTGTTCAGATGACTGTTGAGGAGATGAACATACTAACTACAATCTTCTTGAGATTTGACAATGAAAAGATTTCATATCCAAATTCAGTTCTAGCAAACAAGCCTATCAGTAACTTCTACAGGAGTCCAGAAATGAGCGAATCAATCGAATTTTCTGTCGATATGTCGACACCAATTGAGAGTATCGCAGCTCTGAAATACTTGGAGAGCAAGCCGCAGCATTGGGGTCCGAACCATAGCGTGGTGGTTAAAGATATTGAGAATGTAGACAAGATGAAAATGGGACTCAATGTTAATCACACCATAAACTTTCAGAATTATGGGGATAAGAGCAGCAGAAGATCTGAATTACTCTTGGAGTTAAAGAAAATTCTTGAGGATATTAAGATTAAGTATCATCTTCTGCCACAAGAAGTTCATCTGAGTTATGTAAATTCCGAAAATTCGACAAAACAAACCGTTTGGAGATGA 2250 0.412 MENGEEKGVAAHRTVGTKNEVVLRIPESENIISYSPQQKGSPSKAFVDSSNVELAAELQSLKNSSTVQSPTATTSTRSVGRSEFSKPKSRLVEPPHPIAASFLEDKTQIKSFKSPARTSTSKKTTPNATPPRDVPITPRTPLIGTPMEEEEEEEEEFYKTTNVEVSKKRSGKRWKFLCMIEWVGFVSIVGFLIVSLAIKRLRNSEIWGLELWKWCVLALVILCGRLVTGWFINVMVFLIERNFLFKKKVLYFVYGVKKSVQAFLWLGIVLMAWGLIFNHGIKRSRRVNRVLDYITRSLASCLIGAALWLAKMLLIKLLASHFQSARFFNRIQESIFHQYILRTLSGPPLMEIAENVGKNSSSSRLSFKTLVRENGNEEKKEEVIDVEKLKKMKQEKVSALTMKGLINVIKSSGLTTILPQSVDEDENEQIDSEITSELEAKEAAYRIFSNVAKPGSKYIQKEDLLRFMTNEEVENLLPLFEGAVATGRIKRKSLKNWLVKVYQERQSLVHSLNDTKTAVDDLNLLASVLIIIVIIIVWLLIMGFLTTHVLLFITSQLLLAVFIFGNSAKTVFEAIIFVFVRHPFDVGDRCVIDGVQMTVEEMNILTTIFLRFDNEKISYPNSVLANKPISNFYRSPEMSESIEFSVDMSTPIESIAALKYLESKPQHWGPNHSVVVKDIENVDKMKMGLNVNHTINFQNYGDKSSRRSELLLELKKILEDIKIKYHLLPQEVHLSYVNSENSTKQTVWR* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1306 749 PIRSF Memb_At2g17000 9 747 IPR016688 -
Amo03g1306 749 Pfam Mechanosensitive ion channel 526 723 IPR006685 GO:0016020|GO:0055085
Amo03g1306 749 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 18 739 IPR016688 -
Amo03g1306 749 Gene3D - 583 632 IPR023408 -
Amo03g1306 749 SUPERFAMILY Sm-like ribonucleoproteins 573 632 IPR010920 -
Amo03g1306 749 MobiDBLite consensus disorder prediction 60 82 - -
Amo03g1306 749 Coils Coil 376 396 - -
Amo03g1306 749 MobiDBLite consensus disorder prediction 113 141 - -
Amo03g1306 749 MobiDBLite consensus disorder prediction 113 130 - -
Amo03g1306 749 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 18 739 - -
Amo03g1306 749 MobiDBLite consensus disorder prediction 60 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1306 Amo-Chr3 30959090 30962443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1306 68 738 Mechanosensitive Ion Channel Family AT5G12080 51.098 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1306 K22048 - gmx:100777332 931.013