Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1289 ATGAAGAAAGGGTGCTTAGGACCCAATCTGAAGCTCACTGTTCCTGTTCCTGCAACTCATCACCCTTCTTTTCCAAGCTTCCTGAATGAAAGCGGCACGTTTATTGATGGGAACCTGCTTGTCAATGGCGACGGAGTTCTGATCGCTTCTCAGGGTGAAGTGGGAACTTTGTGTTGTTTTCAGCCACCCCCAGTAAGGGCAATAGACAACAAACTAAGTTTGGCAGACATTGACACAATCAGAGTGATTGGAAAGGGAAATGGAGGGATTGTGCAGTTGGTGCAACACAAATGGACTAATCAATTTTTCGCATTAAAGGAAATCCGAATGATGGTTGAGGAGCCTATGCACACGCAGATAGCACGAGAGCTAAAAATCAATCAGTCAGCACAATGTCCATATGTTGTTGTTTACTACCAATCATTCTACAATAATGGGGTCTTATCAATCATCTTAGAGTACATGGATGGAGGGTCCTTGGAAGATTTTCTTAGCATAGTGAAAACAATTCCAGAGCCATATCTTGCCGCGATCTGCAAGCAGGTGCTGAAGGGTTTAATTTATCTTCATCATGAAAAACATATTATCCATAGGGACTTAAAGCCTTCTAATTTGTTGATAAATCATAGAGGAGAAGTAAAGATTACTGATTTTGGTGTGAGCGCAATCATGGACACCACATCTGGTCTAGCTAATACTTTTATTGGCACATACAGCTACATGTCTCCAGAGAGAATTACTGGAAACCCTGGTGGTTACAACTATAGAAGTGATATATGGAGCTTGGGACTGATATTGCTCAAGTGTGCTACAGGAAAGTTTCCATATACACCACCTGATAAAAAAGAAGGATGGGAAAATATCTACCAGCTTATTGAAATCATTGTCGAAAAACCTCCGCCGAGTGCTCCATCTGATCAATTTTCTCTGGAATTTTGTTCTTTCATCTCTGCATGTTTACAGAAAAATCCAAGGGATAGAAAGTCAGCTCCAGACCTTGCGAGACATCCATTTATCAACATGTATGAGGACTTGGATGTGGACCTTTCAGCATACTTCTCCAATGGAGGATCTACACCTGCAACCATATAA 1092 0.4139 MKKGCLGPNLKLTVPVPATHHPSFPSFLNESGTFIDGNLLVNGDGVLIASQGEVGTLCCFQPPPVRAIDNKLSLADIDTIRVIGKGNGGIVQLVQHKWTNQFFALKEIRMMVEEPMHTQIARELKINQSAQCPYVVVYYQSFYNNGVLSIILEYMDGGSLEDFLSIVKTIPEPYLAAICKQVLKGLIYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSAIMDTTSGLANTFIGTYSYMSPERITGNPGGYNYRSDIWSLGLILLKCATGKFPYTPPDKKEGWENIYQLIEIIVEKPPPSAPSDQFSLEFCSFISACLQKNPRDRKSAPDLARHPFINMYEDLDVDLSAYFSNGGSTPATI* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1289 363 Gene3D Phosphorylase Kinase; domain 1 65 156 - -
Amo03g1289 363 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Amo03g1289 363 ProSiteProfiles Protein kinase domain profile. 77 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g1289 363 CDD PKc_MAPKK_plant_like 75 343 - -
Amo03g1289 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Amo03g1289 363 Pfam Protein kinase domain 79 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g1289 363 Gene3D Transferase(Phosphotransferase) domain 1 157 359 - -
Amo03g1289 363 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 363 - -
Amo03g1289 363 SMART serkin_6 77 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo03g1289 363 PANTHER MAP KINASE KINASE 1 363 - -
Amo03g1289 363 SUPERFAMILY Protein kinase-like (PK-like) 75 344 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1289 Amo-Chr3 30038482 30042606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1289 30 358 MAP Kinase Kinase Gene Family AT4G26070 63.222 3.26e-155 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Amo03g1289 Pkinase 5.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1289 K20603 - gmx:100789241 546.969