Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1281 ATGGCCAAGCGCGGCAAAATCTTTTACGGAGTTTCAAAATTTATAGAGCCCTATATAAGGTTCCCACAATCAGTTTATAAATTATTTCTTTCAAACACACATTTTAAAAGCTTATACATAACCTCATATGTGTTAGTTGTGTTAGAACATTTGGTTAATCCAAAGATGACAGAGGTGTTTGACAAGTTGATGGATGTCAATGCGCGAAAACTTGATTGGAAATTTCAAGTTTATGTTGTCCACCTTTGGGAACCTATTGCTAAACCAAGCTATTCTTTGAAAGCATTTTGCTTTAAACCCATTCCGGAGTTGCTGACTGTCGAAAAGCTGGAAGATTCAGTGCTTATAGTGCAAAGTCATTTTAATATATCCAAGTTACGTATTAACCCTGACCTTGATGAGGTTAAAGAGTTTCATAACAGGAAGCTTTATAGCAAAGCATCTAATTCTGCAAGGATTAGTCACGTTTCATCCCATGGGGATGAAGGACTTACATGGATTGCCGGTACTATTGTTTTGATCAATGCTGGAAAGGATGATTGGTTTTATAAATCCTGCCGAAAGTGTCCAAAGAAGGTAGACACCCCAATCGGCAACAGATATGAGTGTGAAAAATGTGGCCACACTCATGGTAGCGCATCACTTAGGTTCAAGCTCGAGGTAATGGTATATGATGGAACAGGAAGCTTGATGTTGCTGATGTGGGACAGGAAAACGGTACAGCTTTGTGGGAGGCAAGCTGAGCAAATCAAGAATGAAGAAGCCGTTGATGGAGAAGGTTATCCTCCAGCATTGGATAGCATGATGGATAGGAGGTTACTCTTCAAATTAAATGTCAAAGTGTCGAACATTAAGCAGTATGACCATGTTTATACAGTCATGAAAATATGTGATGATGAGGAAATTGTGGAGATTAACCACCCTAAAGCAGTTCCAAACATTGCTGCTGCTACTCTCACTGATACTGGATGCAGTGACTCACTTGATATATCGGCAGCGGTGGTTAATCTGCATAATGATACTGATTCTACACTTTCTGTGGATGGCTTAGAAGATAGTGTCACAAGCCTCAAGTCCAAAACCCCTGCTAAAAGAGCTTCCGTGGGGCTAAAGCAATCCGTGCATATCAATATTGACAATGAAGATGAGTTGGGGTTCTCTACCAACAAGTTTAGCCGAAAGGGTGGAAAGAGGCAGAAGATGCAAATTAATGACAGTGACAACTGA 1227 0.4018 MAKRGKIFYGVSKFIEPYIRFPQSVYKLFLSNTHFKSLYITSYVLVVLEHLVNPKMTEVFDKLMDVNARKLDWKFQVYVVHLWEPIAKPSYSLKAFCFKPIPELLTVEKLEDSVLIVQSHFNISKLRINPDLDEVKEFHNRKLYSKASNSARISHVSSHGDEGLTWIAGTIVLINAGKDDWFYKSCRKCPKKVDTPIGNRYECEKCGHTHGSASLRFKLEVMVYDGTGSLMLLMWDRKTVQLCGRQAEQIKNEEAVDGEGYPPALDSMMDRRLLFKLNVKVSNIKQYDHVYTVMKICDDEEIVEINHPKAVPNIAAATLTDTGCSDSLDISAAVVNLHNDTDSTLSVDGLEDSVTSLKSKTPAKRASVGLKQSVHINIDNEDELGFSTNKFSRKGGKRQKMQINDSDN* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1281 408 Pfam Replication factor-A C terminal domain 169 296 IPR013955 -
Amo03g1281 408 Gene3D - 135 305 IPR012340 -
Amo03g1281 408 MobiDBLite consensus disorder prediction 387 408 - -
Amo03g1281 408 CDD RPA1_DBD_C 169 308 IPR013955 -
Amo03g1281 408 SUPERFAMILY Nucleic acid-binding proteins 160 303 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1281 Amo-Chr3 29719902 29722607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1281 143 259 Core DNA Replication Machinery Family AT5G08020 26.923 3.23e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1281 - - aip:107630584 395.971