Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1274 ATGCTGACMTGCATAGCTCGGCCGAAGAAACTCGGGGAAGACTCACTGAGTCACCCGGACGATCCCAATTCCAGCATCGGAAAGAATCAATCCGTCAAGTCCATCACCTCTCAGTTAAAGGATATTGCGTTGAAGGCGTCGGGTGCGTACAAGAACTGCAGTCCGTGCGCGCCGCCGAGTCGACTCAGGACAGCCAGTGGAGTGGGCGGTGCCAGTATTGGAAGCGGTGGAGACTCGGATGGGGACTCGGATCGGTTCCGGTGGTCGTACAGACGGACAGGGAGCTCAAGCTCGTCGGCGGGGACAAGGACAGGGTGGGGAAAGGAGATGGAGGCGAGACTTAAGGGGATATCGAGCGGCGAGGGGACGCCGAGCTCCGCCGGAGGGAGCGGGCGGAGGGCGGAGCCGGTGGTGGTGCTAGTGGAGGAGAACGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCCGGCGTCTTGATCACGTTCGTGTCGCTTCCCCGTGGCGGGAACGACCTCAAGCGCATACGATTCAGTCGGGAGATATTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTATGACAAGGTCATGGAACTTTACAATGTTCAAAGGCTTAACCGCCAAGCTTTCCCTCTTCCAACTCCACCACGGTCTGAAGATGAGAGTTCAAAGCGTGAATCAATAGAAGACAGCCCTGTAACACCTCCACTAACCAAGGAACGGCTACCTCGAAATTTGTACCGCCCAACAGGGGTGGGAATGGGGTACTCATCCTCAGATTCCTTTGATCATCAGTCGATGCAATCCCGGCATTACAATGATTCAAACGGTCTGAACTCAACCCCAAAGGTTTCAACCATTAGCGCTGCCAAGACAGAGATGTCATCGATGGATGCTTCTATAAGTAGCTCATCCAGAGAAGTGGACCATTCCGGGGAACTATCAATGAGCAATGCTAGTGACTTGGAGACTGAATGGGTTGAGCAGGATGAACCTGGAGTCTACATTACCATTAGAGCACTCCCAGGTGGCAAACGGGAGCTCAAACGAGTGAGGTTCAGCCGAGAAAAATTTGGGGAGATGCATGCTCGACTTTGGTGGGAGGAGAATCGTGCCAGAATACATGAACAATACTTGTAA 1143 0.5398 MLTCIARPKKLGEDSLSHPDDPNSSIGKNQSVKSITSQLKDIALKASGAYKNCSPCAPPSRLRTASGVGGASIGSGGDSDGDSDRFRWSYRRTGSSSSSAGTRTGWGKEMEARLKGISSGEGTPSSAGGSGRRAEPVVVLVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREIFNKWQAQRWWAENYDKVMELYNVQRLNRQAFPLPTPPRSEDESSKRESIEDSPVTPPLTKERLPRNLYRPTGVGMGYSSSDSFDHQSMQSRHYNDSNGLNSTPKVSTISAAKTEMSSMDASISSSSREVDHSGELSMSNASDLETEWVEQDEPGVYITIRALPGGKRELKRVRFSREKFGEMHARLWWEENRARIHEQYL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1274 380 MobiDBLite consensus disorder prediction 18 33 - -
Amo03g1274 380 Pfam Transcription factor regulating root and shoot growth via Pin3 147 201 IPR013591 -
Amo03g1274 380 Pfam Transcription factor regulating root and shoot growth via Pin3 324 379 IPR013591 -
Amo03g1274 380 MobiDBLite consensus disorder prediction 210 283 - -
Amo03g1274 380 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 380 - -
Amo03g1274 380 MobiDBLite consensus disorder prediction 90 104 - -
Amo03g1274 380 Pfam Transcription factor BRX N-terminal domain 30 56 IPR027988 -
Amo03g1274 380 MobiDBLite consensus disorder prediction 1 33 - -
Amo03g1274 380 ProSiteProfiles BRX domain profile. 147 202 IPR013591 -
Amo03g1274 380 MobiDBLite consensus disorder prediction 50 107 - -
Amo03g1274 380 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 380 IPR044532 -
Amo03g1274 380 MobiDBLite consensus disorder prediction 253 283 - -
Amo03g1274 380 ProSiteProfiles BRX domain profile. 325 380 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1274 Amo-Chr3 29453833 29461779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1274 1 380 Major Intrinsic Protein MIP AT1G31880 43.896 3.59e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1274 - - gmx:100794109 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2687 13 54392016 54399807 Amo03g1274 03 29453833 29461779 hybridization
Amo01g2719 01 97992120 97995692 Amo03g1274 03 29453833 29461779 PCT
Amo03g1274 03 29453833 29461779 Amo01g2719 01 97992120 97995692 PCT